Dataset Open Access

Draft genomes of vinasse bacteria

Noriko A. Cassman; Kesia S. Lourenco; Janaina do Carmo; Heitor Cantarella; Eiko E. Kuramae

Twenty-one draft bacterial genomes and their annotations described in the publication Cassman, NA. et. al. 2018, Biotech for Biofuels. The goal of the study was to characterize the microbial assemblage present in sugarcane vinasse, which is the major waste of bioethanol production from sugarcane and generally used as an organic and/or K fertilizer. Briefly, the draft genomes were binned (maxbin2) and manually refined (anvi'o v.2.3.2) from a cross-assembly (metaSPADES v3.8.2) of 18 metagenomes sequenced from six batches of sugarcane vinasse with Illumina Miseq technology. Annotations (prokka v1.12) were carried out against prokka databases (UniProtKB Bacterial and the HAMAP HMM database) along with the dbCAN HMM database (dbCAN-fam-HMMs.v6). The uploaded files are from 1) prokka output: bin nucleotide sequences (fa), protein sequences (faa), annotations (gff and tsv) and annotation info (txt) and 2) anvi'o output: percent recruitment of the bins, bin summary and samples summary.

Funding sources: The Netherlands Organization for Scientific Research (NWO-729.004.003) Sao Paulo State foundation (FAPESP-2013/50365-5, FAPESP BEPE-2014/24141-5, FAPESP-2013/12716-0)
Files (120.4 MB)
Name Size
Bact.001_1.fa
md5:1e4fe374a2e4682c081996e3767b793c
2.4 MB Download
Bact.001_1.faa
md5:670511e74c3a98c9ef12469fc4088a72
792.0 kB Download
Bact.001_1.gff
md5:52fc80aec7f865a3d92045bd75e6a162
3.0 MB Download
Bact.001_1.tsv
md5:1071a9cdcd0459deba4e05dae8be33c6
125.4 kB Download
Bact.001_1.txt
md5:4d76072ff70de6482d77cfefe19c2025
104 Bytes Download
Bact.002_1.fa
md5:859a4e0a67a8f447a4f7ef028015849d
3.5 MB Download
Bact.002_1.faa
md5:31c0a274e7ff454a635ec2869bcfecb6
1.1 MB Download
Bact.002_1.gff
md5:2ff59e23784e276644602271358adcfd
4.2 MB Download
Bact.002_1.tsv
md5:5856e541207696d1fcc8610d72fefabd
151.4 kB Download
Bact.002_1.txt
md5:c200bb4b1f16ed4ae7aa97b11d281587
113 Bytes Download
Bact.003_1.fa
md5:ae5311931d03571353a84face0dc3f2b
2.2 MB Download
Bact.003_1.faa
md5:ea9f70e606bc40fba996a181eca1729d
706.5 kB Download
Bact.003_1.gff
md5:a0f084e1e334116229490163bffad35d
2.7 MB Download
Bact.003_1.tsv
md5:35a34597be1d4e4f56f17fa274adc109
112.3 kB Download
Bact.003_1.txt
md5:df65ef8010be298dae3d528d931e54c9
113 Bytes Download
Bact.005_1.fa
md5:acd645393efc443ecc396eeb857ca072
2.0 MB Download
Bact.005_1.faa
md5:4651e2f81e6e72467c75844dd5f0c301
583.2 kB Download
Bact.005_1.gff
md5:77d440d2b023f3a1123d041fe205af63
2.3 MB Download
Bact.005_1.tsv
md5:d8f5bacbc758db00b8257b9d548d81e5
87.5 kB Download
Bact.005_1.txt
md5:0ce6ba7ea14d3d36fc3393a7646f8b4f
87 Bytes Download
Bact.006_1.fa
md5:d2a431331a9c15dc114f17e353d154af
2.5 MB Download
Bact.006_1.faa
md5:c6bba561e1c29d9b2cd33ee22231e4f3
720.5 kB Download
Bact.006_1.gff
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3.0 MB Download
Bact.006_1.tsv
md5:3002cf6e49f6ac1fc8548d6d7e7c090e
109.3 kB Download
Bact.006_1.txt
md5:e247d3e80294fc5d76221d8beb4849f0
104 Bytes Download
Bact.009_1.fa
md5:0178e8d66a548eb3e4eaa952a5a7e560
2.0 MB Download
Bact.009_1.faa
md5:e24aabb793cfda13947b2e6afd70dd2f
615.6 kB Download
Bact.009_1.gff
md5:168a25c68253a44c9cab5f660f4a211d
2.5 MB Download
Bact.009_1.tsv
md5:4b8a5e2835f4cc7f0ce35c443a0da89e
99.8 kB Download
Bact.009_1.txt
md5:166b432d1e6d03e14e79c36762893e43
87 Bytes Download
Bact.010_1.fa
md5:f52e0bb981649a3f1bf05d28be2bcd84
2.1 MB Download
Bact.010_1.faa
md5:40286bc99fc3d5d48131405ce61a13a5
674.2 kB Download
Bact.010_1.gff
md5:ff80408c23a6395872d9bda6f976bde5
2.6 MB Download
Bact.010_1.tsv
md5:3467b2007fd97cacf209a7bcfa1c641e
104.9 kB Download
Bact.010_1.txt
md5:87ef6660fefe5288d084b879c83f0f93
113 Bytes Download
Bact.012_1.fa
md5:6de7b8267c00aa5df203fc6177e5b701
2.4 MB Download
Bact.012_1.faa
md5:9c7b5b5d32cf4b477511b60436e4eca2
736.7 kB Download
Bact.012_1.gff
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3.0 MB Download
Bact.012_1.tsv
md5:cc0983cb86f22a5b58f736866f0b67bc
122.4 kB Download
Bact.012_1.txt
md5:8f04bcaad44808a5200b2dd7ddbc7423
105 Bytes Download
Bact.016_1.fa
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3.1 MB Download
Bact.016_1.faa
md5:485c9ca83091adaff8ec53ff6ce32094
967.1 kB Download
Bact.016_1.gff
md5:14e9ef51d9615f2213c4cdb25487db81
3.7 MB Download
Bact.016_1.tsv
md5:5368137a6ab449fc81bfae396304fc37
129.5 kB Download
Bact.016_1.txt
md5:33fff80ed6a858a569af0dfb03ed1667
113 Bytes Download
Bact.021_1.fa
md5:ea27e7b000de7bd99c55aed7b312edfa
1.8 MB Download
Bact.021_1.faa
md5:1f5593b8efd53808b32bedc5ef833588
559.0 kB Download
Bact.021_1.gff
md5:096a829765d564ecd2fabdea339d36d5
2.2 MB Download
Bact.021_1.tsv
md5:c719352a2e7fae7e9daf7697d4e07ac4
94.5 kB Download
Bact.021_1.txt
md5:80a5539c80108175797e333e8cb9b8a7
113 Bytes Download
Bact.023_1.fa
md5:2729e9e1d8bc00b837fff87a70fd0499
1.9 MB Download
Bact.023_1.faa
md5:3da82cc5f102fc156a95482a3e9ad33e
571.2 kB Download
Bact.023_1.gff
md5:24212d9143c1f57a061c66d82d4038c2
2.4 MB Download
Bact.023_1.tsv
md5:d790c860ee8fac34c5af180b0ddc2430
98.6 kB Download
Bact.023_1.txt
md5:b658bfcee9faffefc5ab8a0439bd2f5c
113 Bytes Download
Bact.024_1.fa
md5:ef05be375365378a06afb086b63ab429
1.8 MB Download
Bact.024_1.faa
md5:ea31383590b579ebbfafa89e609a3850
565.7 kB Download
Bact.024_1.gff
md5:86d9bac492388470384fc4972c2efddb
2.3 MB Download
Bact.024_1.tsv
md5:bb15e977d3b4b09cb32cf1a434a355a2
97.9 kB Download
Bact.024_1.txt
md5:00696cfe8b304cda4cfbd761f16d7c7e
113 Bytes Download
Bact.025_1.fa
md5:31925974a76167a9cfb652b459bb3d1c
1.8 MB Download
Bact.025_1.faa
md5:67b9eabe3c176c7d79be8b4bef8f5225
442.8 kB Download
Bact.025_1.gff
md5:6601cd26c0bc42a2bd2d0e13a4e095fe
2.2 MB Download
Bact.025_1.tsv
md5:7b650d45ec18def864fdee20934698e0
91.0 kB Download
Bact.025_1.txt
md5:e76d8819eb42f9229efb3b3cc9d9b2b7
113 Bytes Download
Bact.027.fa
md5:8c4c1c78000708bc612488f16dbc6118
2.0 MB Download
Bact.027.faa
md5:f6835c1c7f6fc1ea52687f00a139a89e
631.7 kB Download
Bact.027.gff
md5:fddbffcb406c179b92a66f33e4805777
2.4 MB Download
Bact.027.tsv
md5:04351af74baae6adb93870e0c4713526
105.1 kB Download
Bact.027.txt
md5:ef6c88b296ee585c449a76d8f446faed
96 Bytes Download
Bact.028_1.fa
md5:633306c39fc697b07134f50c06f81fae
2.2 MB Download
Bact.028_1.faa
md5:c524cb298d9b763228d29e8fff3efa5d
651.9 kB Download
Bact.028_1.gff
md5:d22308e415adc3c8899328d6738b4af4
2.7 MB Download
Bact.028_1.tsv
md5:76f5bec368be2a86f88ecf0f9745dc3b
113.2 kB Download
Bact.028_1.txt
md5:83576ae4d7f31c3eba31a8315f7fdc49
96 Bytes Download
Bact.032_1.fa
md5:e2562b562aebea85be40f507cc8ca9af
2.0 MB Download
Bact.032_1.faa
md5:b850cb73b079d56536fbfb739f1fedf0
676.0 kB Download
Bact.032_1.gff
md5:4ba4952dbedd02effb70a197f1233d3a
2.5 MB Download
Bact.032_1.tsv
md5:69d7e2bb25219a16e22a47510961421f
109.2 kB Download
Bact.032_1.txt
md5:8dcf416e3bc3360ee8a7e203be7b129a
113 Bytes Download
Bact.033_1.fa
md5:a1dd8fb64ccc99f0e369100885bd99c0
1.8 MB Download
Bact.033_1.faa
md5:c2f3410e0312f0120020326858feee71
505.6 kB Download
Bact.033_1.gff
md5:5857db0b789e88bb7df5371d48dfeeef
2.2 MB Download
Bact.033_1.tsv
md5:8b67cb81ac357681f1337df6df4a4fbc
91.7 kB Download
Bact.033_1.txt
md5:c8ddd85aaa40bd9095baefbc6bd54c31
87 Bytes Download
Bact.034_1.fa
md5:5487137f57974b6aaf237232204921e2
2.7 MB Download
Bact.034_1.faa
md5:a0d15fc51eb8781265ffaa7f3de6a26a
842.2 kB Download
Bact.034_1.gff
md5:f2c512866867f50c64e3657de8e01ec6
3.4 MB Download
Bact.034_1.tsv
md5:253cb14d38261f09d11b1e48bc3894ca
139.9 kB Download
Bact.034_1.txt
md5:b20433315cbd0634ba6d81f47a7190e5
113 Bytes Download
Bact.035_1.fa
md5:9536dae4bb3c1a5ad8317a266cdfab0b
2.8 MB Download
Bact.035_1.faa
md5:766cc5ff40c0dcb4bee7dd4f47029515
865.8 kB Download
Bact.035_1.gff
md5:7e747d3c397f22f70e055e7ed112a162
3.4 MB Download
Bact.035_1.tsv
md5:e13e09247404a2ae5f2a6326d2064fd2
145.0 kB Download
Bact.035_1.txt
md5:b2033b89e1b20a71cd081698182a8dd4
113 Bytes Download
Bact.039_1.fa
md5:71ab00da86af6d16608dbfc6e788a0a9
1.9 MB Download
Bact.039_1.faa
md5:77352b1b75710b6a30dc48f4a0e60099
612.9 kB Download
Bact.039_1.gff
md5:cbd41ba90c6de43957917cf3072ea925
2.4 MB Download
Bact.039_1.tsv
md5:73a317b41293cd6b63f10c124b6f4b7f
103.3 kB Download
Bact.039_1.txt
md5:845c9da310877e753f3bd67268cb0d71
113 Bytes Download
Bact.040_1.fa
md5:00385b9b704f8044faadf343b724e787
1.6 MB Download
Bact.040_1.faa
md5:8a97b142c828ab3955b99bad03ab098b
552.0 kB Download
Bact.040_1.gff
md5:6abbc07745df9416edb3396370a7782d
2.1 MB Download
Bact.040_1.tsv
md5:4f7c678e984d976b4e62c99c60dc7cb7
91.7 kB Download
Bact.040_1.txt
md5:e330ca2a6e62a48cb535225411d7d29b
88 Bytes Download
bins_percent_recruitment.txt
md5:244b46a1ffc553d4b858c316b6db90bc
19.0 kB Download
bins_summary.txt
md5:097e7e89cee2d59b5dc8ce80873f8025
4.6 kB Download
samples_summary.txt
md5:43e5a73f63175cd83826d5a36c337404
333 Bytes Download
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