Dataset Open Access

Silva taxonomic training data formatted for DADA2 (Silva version 132)

Callahan, Benjamin

These DADA2-formatted training fasta files were derived from the Silva Project's version 132 release. They are available under the Silva dual-licensing model for academia and commercial users: https://www.arb-silva.de/silva-license-information/

These fastas were generated by the following commands (using the dada2 R package version 1.7.6):

path <- "~/Desktop/Silva/Silva.nr_v132"
dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v132.align"), file.path(path, "silva.nr_v132.tax"), "~/tax/silva_nr_v132_train_set.fa.gz")

dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v132.fa.gz")

Files (121.4 MB)
Name Size
SILVA_LICENSE
md5:feff0d7cb0962e6e21161a4bcadeb22f
1.7 kB Download
silva_nr_v132_train_set.fa.gz
md5:2c4e2d8d9a936cdf24a91c0d2c113a43
60.1 MB Download
silva_species_assignment_v132.fa.gz
md5:059fa72391d6aa2f17bf69f2cd63b8ea
61.3 MB Download
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