Dataset Open Access
Processed read counts from macrophage RNA-seq and ATAC-seq experiments
Alasoo, Kaur; Gaffney, Daniel
RNA-seq files:
- RNA_count_matrix.txt.gz - raw read counts
- RNA_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package
- RNA_gene_metadata.txt.gz - information about the genes
- RNA_sample_metadata.txt.gz - information about the samples
ATAC-seq files:
- ATAC_count_matrix.txt.gz - raw read counts
- ATAC_cqn_matrix.txt.gz - read counts quantile normalised with the cqn R package
- ATAC_peak_metadata.txt.gz - peak coordinates and other metadata
- ATAC_sample_metadata.txt.gz - sample metadata
- ATAC_consensus_peaks.gff3.gz - GFF3 file containing the GRCh38 coordinates of the peaks
Files
(211.4 MB)
| Name | Size | |
|---|---|---|
|
ATAC_consensus_peaks.gff3.gz
md5:1931d916e4bc98dd0d0042fad4506cba |
3.4 MB | Download |
|
ATAC_count_matrix.txt.gz
md5:1abd84d00542dd4f40f340e5499f4700 |
45.0 MB | Download |
|
ATAC_cqn_matrix.txt.gz
md5:589f2ffc1a1586d70ab9522216f291c2 |
114.8 MB | Download |
|
ATAC_peak_metadata.txt.gz
md5:9183cf79f6ff266f901a3595a70432af |
5.9 MB | Download |
|
ATAC_sample_metadata.txt.gz
md5:a57a4ee6eb679452381e2dc9455e9062 |
12.0 kB | Download |
|
RNA_count_matrix.txt.gz
md5:ea78bce7df317921aa3c24ae22d971b7 |
10.9 MB | Download |
|
RNA_cqn_matrix.txt.gz
md5:a302dd9912afeb4cf4fa69d5f990e8fd |
28.4 MB | Download |
|
RNA_gene_metadata.txt.gz
md5:e625f24fcf331301385455f577a79c8e |
2.9 MB | Download |
|
RNA_sample_metadata.txt.gz
md5:e575d50dea2a261c6f274df725eed1b3 |
10.4 kB | Download |
2,061
1,370
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 2,061 | 106 |
| Downloads | 1,370 | 33 |
| Data volume | 23.5 GB | 694.3 MB |
| Unique views | 1,778 | 79 |
| Unique downloads | 599 | 15 |
Indexed in
- Publication date:
- January 25, 2017
- DOI:
-
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International