Dataset Open Access
Clover v3 assembly
Dudchenko, Olga;
Pham, Melanie;
Lui, Christopher;
Bayer, Philipp Emanuel;
Erskine, William;
Aiden, Erez Lieberman;
Kaur, Parwinder
We present an assembly of the genome of subterranean clover, Trifolium subterraneum, an important pasture legume. Specifically, in situ Hi-C data (48X) was used to correct misjoins and anchor, order, and orient scaffolds in a previously published genome assembly (TSUd_r1.1; scaffold N50: 287kb). This resulted in an improved genome assembly (TrSub3; scaffold N50: 56Mb) containing eight chromosome-length scaffolds that span 95% of the sequenced bases in the input assembly.
Files
(551.3 MB)
| Name | Size | |
|---|---|---|
|
TrSub3.fasta
md5:f23e60947018df1013fb23937a31e361 |
481.8 MB | Download |
|
TrSubv3.cds.fa
md5:300eb1550b8647251c8bc9b8f0a3f3cc |
35.3 MB | Download |
|
TrSubv3.gff3
md5:4695311268e74cfb693d962c1bf9497d |
21.8 MB | Download |
|
TrSubv3.pep.fa
md5:0292a4b86b3531d828a56ff54ad6a3a7 |
12.5 MB | Download |
269
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views
downloads
| All versions | This version | |
|---|---|---|
| Views | 269 | 269 |
| Downloads | 73 | 73 |
| Data volume | 12.7 GB | 12.7 GB |
| Unique views | 237 | 237 |
| Unique downloads | 45 | 45 |
Indexed in
- Publication date:
- December 7, 2017
- DOI:
-
- License (for files):
- Creative Commons Attribution 4.0 International