Published December 7, 2017 | Version v3.0
Dataset Open

Clover v3 assembly

Creators

  • 1. The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Departments of Computer Science and Computational and Applied Mathematics, Rice University, Houston, TX 77030, USA., Center for Theoretical and Biological Physics, Rice University, Houston, TX 77030, USA.
  • 2. The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Departments of Computer Science and Computational and Applied Mathematics, Rice University, Houston, TX 77030, USA
  • 3. The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.
  • 4. School of Biological Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
  • 5. Centre for Plant Genetics and Breeding, UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia, Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
  • 6. The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Departments of Computer Science and Computational and Applied Mathematics, Rice University, Houston, TX 77030, USA., Center for Theoretical and Biological Physics, Rice University, Houston, TX 77030, USA., Broad Institute of MIT and Harvard, Cambridge, MA 02139, USA.
  • 7. Centre for Plant Genetics and Breeding, UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia

Description

We present an assembly of the genome of subterranean clover, Trifolium subterraneum, an important pasture legume. Specifically, in situ Hi-C data (48X) was used to correct misjoins and anchor, order, and orient scaffolds in a previously published genome assembly (TSUd_r1.1; scaffold N50: 287kb). This resulted in an improved genome assembly (TrSub3; scaffold N50: 56Mb) containing eight chromosome-length scaffolds that span 95% of the sequenced bases in the input assembly.

Files

Files (551.3 MB)

Name Size Download all
md5:f23e60947018df1013fb23937a31e361
481.8 MB Download
md5:300eb1550b8647251c8bc9b8f0a3f3cc
35.3 MB Download
md5:4695311268e74cfb693d962c1bf9497d
21.8 MB Download
md5:0292a4b86b3531d828a56ff54ad6a3a7
12.5 MB Download