Dataset Open Access

Clover v3 assembly

Dudchenko, Olga; Pham, Melanie; Lui, Christopher; Bayer, Philipp Emanuel; Erskine, William; Aiden, Erez Lieberman; Kaur, Parwinder

We present an assembly of the genome of subterranean clover, Trifolium subterraneum, an important pasture legume. Specifically, in situ Hi-C data (48X) was used to correct misjoins and anchor, order, and orient scaffolds in a previously published genome assembly (TSUd_r1.1; scaffold N50: 287kb). This resulted in an improved genome assembly (TrSub3; scaffold N50: 56Mb) containing eight chromosome-length scaffolds that span 95% of the sequenced bases in the input assembly.

Files (551.3 MB)
Name Size
TrSub3.fasta
md5:f23e60947018df1013fb23937a31e361
481.8 MB Download
TrSubv3.cds.fa
md5:300eb1550b8647251c8bc9b8f0a3f3cc
35.3 MB Download
TrSubv3.gff3
md5:4695311268e74cfb693d962c1bf9497d
21.8 MB Download
TrSubv3.pep.fa
md5:0292a4b86b3531d828a56ff54ad6a3a7
12.5 MB Download
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