Published December 20, 2017 | Version v1
Journal article Open

High rates of click communication in wild harbour porpoises (Phocoena phocoena)

  • 1. Zoophysiology, Department of Bioscience, Aarhus University, C.F. Moellers allé 3, DK-8000 Aarhus C, Denmark
  • 2. Hopkins Marine Station, Stanford University, 120 Ocean View Blvd, Pacific Grove, CA 93950, USA
  • 3. Aarhus Institute of Advanced Studies, Aarhus University, DK, Høegh-Guldbergs Gade 6b, 8000 Aarhus C, Denmark
  • 4. Sea Mammal Research Unit, Scottish Oceans Institute, University of St. Andrews, St. Andrews, Fife, KY16 8LB, United Kingdom
  • 5. Marine Mammal Research, Department of Bioscience, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark

Description

This upload contains the raw data (.dtg files) from two of the six harbour porpoise deployments of this study (hp12_293a and hp15_218a). It also contains the Matlab scripts used to acoustically and visually process the data (runAUDIT.m, d3audithp.m) and how to automatically detect and save cues for individual clicks within the marked click trains of interest (runPCclickdetector.m, detectTagclicks3.m), in this case, calls and buzzes. Finally, it contains a script that saves the time and sample cues of all detected clicks within each click train in individual files (PCfakeFMPCperm.m) and a script that enables manual correction of those click trains in which clicks have been falsely detected or missed (PCfixfakeFMPCT.m). Additional scripts used to run these scripts can be found in the Tag Toolbox that can be accessed and downloaded on www.animaltags.org.

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