Published March 13, 2024
| Version v1
Journal article
Open
Multiple evidence reveals two new species and new distributions of Calocybe species (Lyophyllaceae) from northeastern China
Creators
- 1. Northeast Normal University, Changchun, China
- 2. Jilin Agricultural University, Changchun, China|Zhejiang Normal University, Jinhua, China
- 3. Forestry Resources Protection Institute, Jilin Provincial Academy of Forestry Sciences, Changchun, China
- 4. Jilin Agricultural University, Changchun, China
- 5. Institute of Agricultural Applied Microbiology, Jiangxi Academy of Agricultural Sciences, Nanchang, China
Description
The Calocybe species possess notable economic and medicinal value, demonstrating substantial potential for resource utilization. The taxonomic studies of Calocybe are lacking in quality and depth. Based on the specimens collected from northeast China, this study provides a detailed description of two newly discovered species, namely Calocybe betulicola and Calocybe cystidiosa, as well as two commonly found species, Calocybe decolorata and Calocybe ionides. Additionally, a previously unrecorded species, C. decolorata, has recently been discovered in Jilin Province, China. The two newly discovered species can be accurately distinguished from other species within the genus Calocybe based on their distinct morphological characteristics. The primary distinguishing features of C. betulicola include its grayish-purple pileus, grayish-brown to dark purple stipe, smaller basidiomata, absence of cellular pileipellis, and its habitat on leaf litter within birch forests. Calocybe cystidiosa is distinguished by its growth on the leaf litter of coniferous forests, a flesh-pink pileus, a fibrous stipe with a white tomentose covering at the base, non-cellular pileipellis, larger basidiospores, and the presence of cheilocystidia. The reconstruction of phylogenetic trees using combined ITS, nLSU, and tef1-α sequences, employing maximum likelihood and Bayesian inference analyses, showed that C. betulicola formed a cluster with C. decurrens, while C. cystidiosa clustered with C. vinacea. However, these two clusters formed separate branches themselves, which also supported the results obtained from our morphological studies. A key to the Calocybe species reported from northeast China is provided to facilitate future studies of the genus.
Files
MC_article_116605.pdf
Files
(5.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:156ee007f9ce2188b253265948d85aec
|
5.1 MB | Preview Download |
System files
(208.2 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:c07514b41ad6b6a3c9269ce0066a89db
|
208.2 kB | Download |
Linked records
Oops! Something went wrong while fetching results.
Additional details
References
- Bau T, Wang CY, Li Y (2003) Notes on Basidiomycetes of Jilin Province (V). Journal of Fungal Research 1: 13–16. https://doi.org/10.13341/j.jfr.2003.01.010
- Bellanger JM, Moreau PA, Corriol G, Bidaud A, Chalange R, Dudova Z, Richard F (2015) Plunging hands into the mushroom jar: A phylogenetic framework for Lyophyllaceae (Agaricales, Basidiomycota). Genetica 143(2): 169–194. https://doi.org/10.1007/s10709-015-9823-8
- César E, Bandala VM, Montoya L, Ramos A (2018) A new Gymnopus species with rhizomorphs and its record as nesting material by birds (Tyrannidae) in the subtropical cloud forest from eastern Mexico. MycoKeys 21: 21–34. https://doi.org/10.3897/mycokeys.42.28894
- Cubeta M, Echandi E, Abernethy T, Vilgalys R (1991) Characterization of anastomosis groups of binucleate Rhizoctonia species using restriction analysis of an amplified ribosomal RNA gene. Phytopathology 81(11): 1395–1400. https://doi.org/10.1094/Phyto-81-1395
- Donk MA (1962) The generic names proposed for Agaricaceae. J. Cramer, Weinheim, German. Taxon 11(3): 75–104. https://doi.org/10.2307/1216021
- Edler D, Klein J, Antonelli A, Silvestro D (2021) RaxmlGUI 2.0: A graphical interface and toolkit for phylogenetic analyses using RAxML. Methods in Ecology and Evolution 12(2): 373–377. https://doi.org/10.1111/2041-210X.13512
- Fan YG, Bau T (2006) Notes on basidiomycetes of Jilin province (VII). Journal of Fungal Research 4: 34–37. https://doi.org/10.13341/j.jfr.2006.02.008
- Floriani M, Vizzini A (2016) Calocybe pilosella sp. nov., a distinctive new lyophylloid agaric collected near Trento (Italy). Studi Trentini di Scienze Naturali 95: 17–24.
- Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes‐application to the identification of mycorrhizae and rusts. Molecular Ecology 2(2): 113–118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
- Garnica S, Weiss M, Walther G, Oberwinkler F (2007) Reconstructing the evolution of agarics from nuclear gene sequences and basidiospore ultrastructure. Mycological Research 111(9): 1019–1029. https://doi.org/10.1016/j.mycres.2007.03.019
- Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nuclc Acids Symposium Series 41: 95–98. doi:https://doi.org/10.1021/bk-1999-0734.ch008
- Hofstetter V, Clémençon H, Vilgalys R, Moncalvo JM (2002) Phylogenetic analyses of the Lyophylleae (Agaricales, Basidiomycota) based on nuclear and mitochondrial rDNA sequences. Mycological Research 106(9): 1043–1059. https://doi.org/10.1017/S095375620200641X
- Hu JJ, Song LR, Tuo YL, Zhao GP, Lei Y, Zhang B, Li Y (2022a) Multiple evidences reveal new species and a new record of smelly Gymnopus (Agaricales, Omphalotaceae) from China. Frontiers in Microbiology 13: 968617. https://doi.org/10.3389/fmicb.2022.968617
- Hu JJ, Zhao GP, Tuo YL, Rao G, Zhang ZH, Qi ZX, Yue L, Liu YJ, Zhang T, Li Y, Zhang B (2022b) Morphological and Molecular Evidence Reveal Eight New Species of Gymnopus from Northeast China. Journal of Fungi 8(4): 349. https://doi.org/10.3390/jof8040349
- Kalyaanamoorthy S, Minh BQ, Wong TK, Von Haeseler A, Jermiin LS (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods 14(6): 587–589. https://doi.org/10.1038/nmeth.4285
- Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Molecular Biology and Evolution 30(4): 772–780. https://doi.org/10.1093/molbev/mst010
- Kühner R, Romagnesi H (1953) Flore analytique des champignons supérieurs (agarics,bolets,chanterelles). Masson et Cie, Paris, France.
- Li JJ, Wu SY, Yu XD, Zhang SB, Cao DX (2017) Three new species of Calocybe (Agaricales, Basidiomycota) from northeastern China are supported by morphological and molecular data. Mycologia 109(1): 55–63. https://doi.org/10.1080/00275514.2017.1286570
- Mao XL (2000) The macrofungi in China. Henan science and technology press, Zhengzhou, China.
- Matheny PB, Curtis JM, Hofstetter VM, Aime MC, Moncalvo JM, Ge ZW, Yang ZL, Slot JC, Ammirati JF, Baroni TJ, Bougher NL, Hughes KW, Lodge DJ, Kerrigan RW, Seidl MT, Aanen DK, DeNitis M, Daniele GM, Desjardin DE, Kropp BR, Norvell LL, Parker A, Vellinga EC, Vilgalys R, Hibbett DS (2006) Major clades of Agaricales: A multilocus phylogenetic overview. Mycologia 98(6): 984–997. https://doi.org/10.1080/15572536.2006.11832627
- Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY, Aime MC, Hofstetter V, Verduin SJ, Larsson E, Baroni TJ (2002) One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution 23(3): 57–400. https://doi.org/10.1016/S1055-7903(02)00027-1
- Mu L, Bau T (2023) A new species of Calocybe (Agaricales, Basidiomycota) from China. Phytotaxa 600(2): 73–78. https://doi.org/10.11646/phytotaxa.600.2.2
- Qi Y, Xu A, Zhou Y, Bi K, Qin W, Guo H, Yu X (2022) Morphological and phylogenetic studies of three new species of Calocybe (Agaricales, Basidiomycota) from China. Diversity 14(8): 643. https://doi.org/10.3390/d14080643
- Ranwez V, Douzery EJ, Cambon C, Chantret N, Delsuc F (2018) MACSE v2: Toolkit for the alignment of coding sequences accounting for frameshifts and stop codons. Molecular Biology and Evolution 35(10): 2582–2584. https://doi.org/10.1093/molbev/msy159
- Rehner SA, Samuels GJ (1994) Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycological Research 98(6): 625–634. https://doi.org/10.1016/S0953-7562(09)80409-7
- Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12): 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
- Royal Botanic Garden E (1969) Flora of British fungi: colour identification chart. HM Stationery Office.
- Singer R (1962) The Agaricales in modern taxonomy 2ED. J. Cramer, Germany.
- Singer R (1986) The Agaricales in modern taxonomy 4ED. Koeltz Botanical Books, Koenigstein, Germany.
- Tai FL (1979) Sylloge Fungorum Sinicorum. Science Press, Academic Sinica, Beijing, China, 419–420.
- Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25(24): 4876–4882. https://doi.org/10.1093/nar/25.24.4876
- Van de Peppel LJJ, Aime MC, Læssøe T, Pedersen OS, Coimbra VRM, Kuyper TW, Stubbe D, Aanen DK, Baroni TJ (2022) Four new genera and six new species of lyophylloid agarics (Agaricales, Basidiomycota) from three different continents. Mycological Progress 21(10): 1–14. https://doi.org/10.1007/s11557-022-01836-7
- Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8): 4238–4246. https://doi.org/10.1128/jb.172.8.4238-4246.1990
- Vizzini A, Antonin V, Sesli E, Contu M (2015) Gymnopus trabzonensis sp. nov. Omphalotaceae and Tricholoma virgatum var. fulvoumbonatum var. nov. Tricholomataceae, two new white-spored agarics from Turkey. Phytotaxa 226(2): 119–130. https://doi.org/10.11646/phytotaxa.226.2.2
- Xu JZ, Yu XD, Zhang CL, Li Y (2019) Two new species of Calocybe (Lyophyllaceae) from northeast China. Phytotaxa 425(4): 219–232. https://doi.org/10.11646/phytotaxa.425.4.3
- Xu JZ, Yu X, Suwannarach N, Jiang Y, Zhao W, Li Y (2021a) Additions to Lyophyllaceae s.l. from China. Journal of Fungi 7(12): 1101. https://doi.org/10.3390/jof7121101
- Xu JZ, Yu XD, Zhang CL, Li Y (2021b) Morphological characteristics and phylogenetic analyses revealed a new Calocybe (Lyophyllaceae, Basidiomycota) species from northeast China. Phytotaxa 490(2): 203–210. https://doi.org/10.11646/phytotaxa.490.2.7
- Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT (2020) PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Molecular Ecology Resources 20(1): 348–355. https://doi.org/10.1111/1755-0998.13096
- Zhou Y (2022) Morphological classification and molecular systematics of Calocybe. Master's thesis, Shenyang agricultural university, Shenyang, China.