Datasets of the DIMet manuscript

Datasets for reproducing the results of the manuscript "DIMet : An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data". DIMet tool is available here, and the tool documentation is accessible in the DIMet wiki page and in its Galaxy site.

  Users of the Galaxy version of DIMet:

• download and decompress (unzip) the .zip file.
• within the 'datasets_manuscript_DIMet/' there is a sub-folder data/, preserve.
• within 'datasets_manuscript_DIMet/' there is a sub-folder config/, the user can delete it as it is not used in the Galaxy version.
• use the .csv files that are provided in data/ . The specific .csv files to be given as input are explained in each 'dimet_' module in Galaxy.
• check  metadata_endo_ldh.csv and metadata_timeseries.csv files: if all the content has quotes (") for delimiting the strings, please edit the file in a plain text editor (e.g. pad, gedit, etc) and delete such quotes (replace all " by no character).  These quotes (") in the samples metadata, which are tolerated in the command line version, are not allowed in the galaxy version.

  Users of the command-line version of DIMet:

• download, decompress it and follow the instructions of the documentation in the DIMet wiki page.