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Published April 11, 2025 | Version 3.0.0-draft.2
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nfdi4plants/ARC-specification: Annotated Research Context Specification v3.0-draft.2

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Description

Annotated Research Context Specification version 3.0.0-draft.2

This draft release mainly bundles changes which further align the experimental provencance (ISA) with the computational provencance (CWL). For this, isa.run.xlsx and isa.workflow.xlsx files were specified which follow the structural conventions of the ISA-XLSX specification, but describe computational entities stemming from the CWL context.

It includes the specification of the ISA-XLSX format at the same version and is marked as draft to allow bundling subsequent breaking changes into a single major release (3.x)

ARC Specification changes

  • Add isa.run.xlsx to run folder by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/157
  • Add isa.workflow.xlsx to workflow folder by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/159
  • Allow datamap only as own file by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/142

ISA-XLSX Specification changes

NEW RUN Section

  • Define RUN section and RUN file by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/157

NEW WORKFLOW Section

  • Define WORKFLOW section and WORKFLOW file by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/159

STUDY Section

  • Datamap may no longer be a worksheet in the isa.study.xlsx file by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/142

ASSAY Section

  • Datamap may no longer be a worksheet in the isa.assay.xlsx file by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/142
  • Assay section now has new properties Identifier, Title and Description by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/154

DATAMAP Section

  • Added Label column by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/155

Other

  • Fixed dead link to specification file from readme by @floWetzels in https://github.com/nfdi4plants/ARC-specification/pull/148

  • Changes for v3.0-draft.2 - Workflow and Run ISA integration by @HLWeil in https://github.com/nfdi4plants/ARC-specification/pull/162

Full Changelog: https://github.com/nfdi4plants/ARC-specification/compare/3.0.0-draft.1...3.0.0-draft.2

Files

nfdi4plants/ARC-specification-3.0.0-draft.2.zip

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Related works

Is supplement to
Software: https://github.com/nfdi4plants/ARC-specification/tree/3.0.0-draft.2 (URL)

Software

Repository URL
https://github.com/nfdi4plants/ARC-specification