Published November 10, 2023
| Version v2
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SEAMM Tutorial 5: Looping over structures
Description
This is the flowchart for SEAMM tutorial #5, which shows how to loop over structures and put key results in tables.
Topics Covered:
1. Looping over input data.
2. Capturing key results in tables.
3. A start to understanding the energies produced by DFTB+ and other quantum chemistry codes.
4. Viewing a set of structures in an SDF file.
The tutorial uses the following SMILES: CO CCO CCCO CC(O)C CS CCS CCCS CC(S)C
however, this flowchart is quite general and can be used for other structures.
The final table in the tutorial is as follows:
Structure total energy (E_h) energy of formation (kJ/mol)
methanol -6.523397 -242.734519
ethanol -8.997975 -274.559845
propan-1-ol -11.468303 -295.223184
propan-2-ol -11.471641 -303.988952
methanethiol -5.643340 -50.538614
ethanethiol -8.115706 -76.553701
propane-1-thiol -10.585702 -96.347049
propane-2-thiol -10.587082 -99.971550
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Additional details
Funding
- U.S. National Science Foundation
- S2I2: Impl: The Molecular Sciences Software Institute 2136142