Published October 24, 2024 | Version v1.9.1
Software Open

navis-org/navis: Version 1.9.1

Creators

  • 1. University of Cambridge
  • 2. AdInMo
  • 3. University of Cambridge & MRC LMB
  • 4. Charité Universitätsmedizin Berlin
  • 5. VirtualFlyBrain.org
  • 6. Allen Institute for Brain Science
  • 7. Janelia Research Campus
  • 8. Allen Institute
  • 9. VIB-KU Leuven

Description

This minor version bump fixes a few smaller issues:

  • MICrONS & H01 interfaces:
    • fetch_neurons now accepts a materialization parameter that determines which materialization version is used for synapse and nucleus queries; defaults to "auto" which means navis will try to find a materialization version matching the queried root IDs
    • fetch_neurons will now also assign soma positions for H01 neurons (see the .soma_pos neuron property); previously this only worked for MICrONS neurons
    • datastack="cortex65" now points to the correct MICrONS datastack
  • CloudVolume.mesh.get_navis (see navis.patch_cloudvolume) now accepts a process (default is False) parameter that determines whether the NeuroGlancer mesh is processed (deduplication of vertices, etc.); contribute by @fcollman
  • fixed a bug in navis.subset_neuron that caused branch points to not be re-calculated

Files

navis-org/navis-v1.9.1.zip

Files (42.5 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/navis-org/navis/tree/v1.9.1 (URL)