assembly_finder: download genomes using NCBI datasets

Published August 14, 2025 | Version v0.9.0

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1. Institute of Microbiology, Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland

Snakemake-powered cli to download genomes using NCBI datasets

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If you use this software, please cite it using the metadata from this file.

Name	Size	Download all
metagenlab/assembly_finder-v0.9.0.zip md5:7df161f1d1ef0d436766e9bf33794b00	38.1 kB	Preview Download

Is supplement to: Software: https://github.com/metagenlab/assembly_finder/tree/v0.9.0 (URL)

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Zenodo

License: MIT License

A short and simple permissive license with conditions only requiring preservation of copyright and license notices. Licensed works, modifications, and larger works may be distributed under different terms and without source code. Read more