Published August 18, 2025 | Version data_v0.2.31
Software Open

SACGF/cdot: data_v0.2.31

Creators

  • 1. Centre for Cancer Biology ACRF Cancer Genomics facility
  • 2. CUBI Core Unit Bioinformatics, Berlin Institute of Health

Description

cdot-0.2.31.ensembl.GRCh37.json.gz

Method: Merge historical Input files:

  • ensembl/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_Ensembl_82.gtf.json.gz
  • ensembl/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_Ensembl_85.gtf.json.gz
  • ensembl/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_Ensembl_87.gtf.json.gz

cdot-0.2.31.Homo_sapiens_GRCh37_Ensembl_87.gtf.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh37_Ensembl_87.gtf.gz

cdot-0.2.31.ensembl.GRCh38.json.gz

Method: Merge historical Input files:

  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_81.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_82.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_83.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_84.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_85.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_86.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_87.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_88.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_89.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_90.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_91.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_92.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_93.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_94.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_95.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_96.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_97.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_98.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_99.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_100.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_101.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_102.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_103.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_104.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_105.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_106.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_107.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_108.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_109.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_110.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_111.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_112.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_113.gtf.json.gz
  • ensembl/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_114.gtf.json.gz

cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_110.gtf.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh38_Ensembl_110.gtf.gz

cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_111.gtf.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh38_Ensembl_111.gtf.gz

cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_112.gtf.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh38_Ensembl_112.gtf.gz

cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_113.gtf.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh38_Ensembl_113.gtf.gz

cdot-0.2.31.Homo_sapiens_GRCh38_Ensembl_114.gtf.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh38_Ensembl_114.gtf.gz

cdot-0.2.31.ensembl.T2T-CHM13v2.0.json.gz

Method: Merge historical Input files:

  • ensembl/T2T-CHM13v2.0/cdot-0.2.31.Homo_sapiens_T2T-CHM13v2.0_Ensembl_2022_06.gtf.json.gz
  • ensembl/T2T-CHM13v2.0/cdot-0.2.31.Homo_sapiens_T2T-CHM13v2.0_Ensembl_2022_07.gtf.json.gz

cdot-0.2.31.all-builds-refseq-grch37_grch38_t2t-chm13v2.0.json.gz

Method: Combine multiple genome builds Input files:

  • refseq/cdot-0.2.31.refseq.GRCh37.json.gz
  • refseq/cdot-0.2.31.refseq.GRCh38.json.gz
  • refseq/cdot-0.2.31.refseq.T2T-CHM13v2.0.json.gz

cdot-0.2.31.refseq.GRCh37.json.gz

Method: Merge historical Input files:

  • refseq/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_p5.gff3.json.gz
  • refseq/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_103.gff3.json.gz
  • refseq/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_104.gff3.json.gz
  • refseq/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_105.gff3.json.gz
  • refseq/GRCh37/cdot-0.2.31_uta.Homo_sapiens_GRCh37_UTA_20241220.json.gz
  • refseq/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_105.20190906.gff.json.gz
  • refseq/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_105.20201022.gff.json.gz
  • refseq/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_105.20220307.gff.json.gz
  • refseq/GRCh37/cdot-0.2.31.Homo_sapiens_GRCh37_RS_2024_09.json.gz

cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_105.20201022.gff.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh37_RefSeq_105.20201022.gff.gz

cdot-0.2.31.Homo_sapiens_GRCh37_RefSeq_105.20220307.gff.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh37_RefSeq_105.20220307.gff.gz

cdot-0.2.31.refseq.GRCh38.json.gz

Method: Merge historical Input files:

  • refseq/GRCh38/cdot-0.2.31_uta.Homo_sapiens_GRCh38_UTA_20241220.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_106.gff3.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_107.gff3.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_108.gff3.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.gff3.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.GCF.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20190607.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20190905.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20191205.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20200228.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20200522.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20200815.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20201120.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20210226.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20210514.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_109.20211119.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_110.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_RS_2023_03.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_RS_2023_10.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_RS_2024_08.gff.json.gz
  • refseq/GRCh38/cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_RS_2025_08.gff.json.gz

cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_110.gff.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh38_RefSeq_110.gff.gz

cdot-0.2.31.Homo_sapiens_GRCh38_RefSeq_RS_2023_10.gff.json.gz

Method: Single GFF3 file Input files:

  • downloads/Homo_sapiens_GRCh38_RefSeq_RS_2023_10.gff.gz

cdot-0.2.31.refseq.T2T-CHM13v2.0.json.gz

Method: Merge historical Input files:

  • refseq/T2T-CHM13v2.0/cdot-0.2.31.Homo_sapiens_T2T-CHM13v2.0_RefSeq_110.gff.json.gz
  • refseq/T2T-CHM13v2.0/cdot-0.2.31.Homo_sapiens_T2T-CHM13v2.0_RefSeq_RS_2023_03.gff.json.gz
  • refseq/T2T-CHM13v2.0/cdot-0.2.31.Homo_sapiens_T2T-CHM13v2.0_RefSeq_RS_2023_10.gff.json.gz
  • refseq/T2T-CHM13v2.0/cdot-0.2.31.Homo_sapiens_T2T-CHM13v2.0_RefSeq_RS_2024_08.gff.json.gz
  • refseq/T2T-CHM13v2.0/cdot-0.2.31.Homo_sapiens_T2T-CHM13v2.0_RefSeq_RS_2025_08.gff.json.gz

Files

SACGF/cdot-data_v0.2.31.zip

Files (625.1 kB)

Name Size Download all
md5:cf910f7a4dd66e15117c0bb69f62e200
625.1 kB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/SACGF/cdot/tree/data_v0.2.31 (URL)

Software

Repository URL
https://github.com/SACGF/cdot