NFDI4BIOIMAGE
Published February 26, 2024 | Version v11
Poster Open

RDF as a bridge to domain-platforms like OMERO, or There and back again.

Creators

  • 1. German BioImaging e.V Society for Microscopy and Image Analysis Konstanz, Germany
  • 2. Micelio, Belgium
  • 3. Centre for Digital Scholarship Leiden University Libraries, The Netherlands
  • 4. Leiden Institute of Advanced Computer Science, The Netherlands
  • 5. Department of Biology/Chemistry Center for Cellular Nanoanalytics, University of Osnabrück, Germany

Description

In 2005, the first version of OMERO stored RDF natively. However, just a year after the 1.0 release of RDF, performance considerations led to the development of a more traditional SQL approach for OMERO. A binary protocol makes it possible to query and retrieve metadata but the resulting information cannot immediately be combined with other sources. This is the adventure of rediscovering the benefit of RDF triples as a -- if not the -- common exchange mechanism.

 

This poster was presented at SWAT4HCLS in Leiden, NL, 2024 as Poster 54. See https://www.swat4ls.org/workshops/leiden2024 for more information.

Other (English)

NFDI4BIOIMAGE is funded by DFG grant number NFDI 46/1, project number 501864659.

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SWAT4HCLS_2024_v11.pdf

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