Published February 21, 2024 | Version 1.0
Dataset Open

Supporting materials for "Direction-aware functional class scoring enrichment analysis of Infinium DNA methylation data"

Creators

  • 1. Deakin University, School of Life and Environmental Sciences, Geelong, Australia.
  • 2. Burnet Institute, Melbourne, Australia.
  • 3. Deakin University, School of Exercise and Nutrition Sciences, Institute for Physical Activity and Nutrition, Geelong, Australia.
  • 4. Murdoch Children's Research Institute, Melbourne, Australia.
  • 5. Deakin University, School of Medicine, Geelong, Australia.

Description

Here are the supporting information for the manuscript entitled "Direction-aware functional class scoring enrichment analysis of Infinium DNA methylation data". The article describes a method for accurate pathway enrichment analysis of Infinium Methylation array data.

This archive contains the software repository for the project at time of public release, a docker image to facilitate reproduction, a copy of the preprint and an R Markdown generated HTML report that demonstrates a simple application of the method as mentioned in the preprint. 

The PDF file "Direction-aware FCS V2.3 preprint.pdf" is the preprint. The "gmea.tar.gz" file is the docker image. The "gmea-main.zip" file is the git software repository. The "example_workflow.html" file is the HTML report.

Files

Direction-aware FCS V2.3 preprint.pdf

Files (2.7 GB)

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md5:f88ae70f2cba2181296444fef3865d55
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md5:07ef45780b7dfb0424c42b1cd6db668a
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Additional details

Dates

Created
2024-02-21
Public release

Software

Repository URL
https://github.com/markziemann/gmea
Programming language
RMarkdown
Development Status
Active