Published September 12, 2025 | Version v3.0.6
Software Open

Single-cell RNA sequencing (scRNA-seq) Data Processing & Visualization Workflow

Creators

  • 1. CeMM Research Center for Molecular Medicine

Description

A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

Notes

If you use this software, please cite it using the metadata from this file.

Files

epigen/scrnaseq_processing_seurat-v3.0.6.zip

Files (989.1 kB)

Name Size Download all
md5:7ea0927ba6922b6c839e9547057355ec
989.1 kB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/epigen/scrnaseq_processing_seurat/tree/v3.0.6 (URL)

Software

Repository URL
https://github.com/epigen/scrnaseq_processing_seurat