AU-ENVS-Bioinformatics/jupyter_annotation: v0.0.2

Minor changes to publish in Zenodo.

This repository comprises notebooks to facilitate the annotation of contigs generated from de novo assembly of mRNA reads obtained through Total-RNA sequencing. The provided databases include AromaDeg, CARD, MCycDB, SCyDB, NCBI AMR, Plasticdb, and AnnoTree. Key Features:

Initial setup established Minimal support was added for the following databases: AromaDeg, CARD, MCycDB, SCyDB, NCBI AMR, Plasticdb and AnnoTree. Addition of functionalities for Lowest Common Ancestor and best Hit for functional annotation Please note that this repository is a work in progress and primarily intended for internal use. We have included sample data for testing purposes to ensure the functionality of the notebooks.

For further details, refer to the respective notebooks and documentation in the repository.