Published August 4, 2025
| Version 2.0
Dataset
Open
RNA-KG
Description
Linked open data from selected sources and (cleaned) ontology for constructing RNA-KG v2.0.
- Raw data are stored in resources
- The database dump is stored in rnakgv20.dump
- List of nodes and edges are provided in CSV in graph.zip
- Code is available on GitHub
RNA-KG v2.0 can be queried at: https://neo4j.biodata.di.unimi.it (usr and pwd: rnakgv20).
RNA-KG v2.0 website which includes documentation, visualization facilities, and predefined views (subgraphs of interest) is available at: https://RNA-KG.biodata.di.unimi.it.
Files
graph.zip
Additional details
Dates
- Submitted
-
2025-08-10
Software
- Repository URL
- https://github.com/AnacletoLAB/RNA-KG
- Programming language
- Python
References
- Cavalleri, E., Cabri, A., Soto-Gomez, M. et al. An ontology-based knowledge graph for representing interactions involving RNA molecules. Sci Data 11, 906 (2024). https://doi.org/10.1038/s41597-024-03673-7
- Cavalleri, E., Perlasca, P., Mesiti, M. RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties. Pre-print on arXiv (2025). https://doi.org/10.48550/arXiv.2508.07427