Published October 24, 2023
| Version v1
Dataset
Open
MALDI-IMS files of 53 experiments over sections of nevus, primary melanoma and melanoma metastasis in imzml format
Creators
-
Huergo-Baños, Cristina
(Data collector)1
- Velasco, Verónica (Data curator)2, 3
- Garate, Jone (Data collector)1
- Fernández, Roberto (Data manager)1
-
Martín-Allende, Javier
(Other)4
- Zabalza, Ignacio (Data curator)5, 3
- Artola, Juan L. (Data collector)6
- Martí, Rosario M. (Data collector)7, 8
- Asumendi, Aintzane (Data manager)9, 3
- Astigarraga, Egoitz (Data manager)
- Barreda-Gómez, Gabriel (Data manager)10
- Fresnedo, Olatz (Data curator)11
- Ochoa, Begoña (Data curator)11
- Boyano, María D. (Data manager)9
-
Fernández, José A.
(Contact person)1
- 1. Department of Physical Chemistry, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Barrio Sarriena, s/n, 48940 Leioa, Spain
- 2. Department of Pathology, Cruces University Hospital, 48903 Barakaldo, Spain
- 3. Biocruces-Bizkaia Health Research Institute, Cruces University Hospital, 48903 Barakaldo, Spain
- 4. Languages and Computer systems, School of Engineering University of the Basque Country (UPV/EHU), Paseo Rafael Moreno "Pitxitxi", n. 2/3 48013 - Bilbao, Spain
- 5. Department of Pathology, Galdakao-Usansolo University Hospital, Galdakao, Spain
- 6. Department of Dermatology, Galdakao-Usansolo University Hospital, Galdakao, Spain
- 7. Department of Dermatology, Arnau de Vilanova University Hospital, Institute of Biomedic Research (IRBLleida), University of Lleida, 25198 Lleida, Spain
- 8. Centre of Biomedical Research on Cancer (CIBERONC), Instituto de Salud Carlos III (ISCIII), Madrid. Spain
- 9. Department of Cell Biology and Histology, Faculty of Medicine and Nursing, University of the Basque Country (UPV/EHU), Barrio Sarriena, s/n, 48940 Leioa, Spain
- 10. Department R+D, IMG Pharma Biotech S.L., BIC Bizkaia 612, Astondo bidea, 48160 Derio, Spain
- 11. Department of Physiology, Faculty of Medicine and Nursing, University of the Basque Country (UPV/EHU), Barrio Sarriena, s/n, 48940 Leioa, Spain
Description
MALDI-IMS files of 53 experiments over sections of nevus, primary melanoma and melanoma metastasis in imzml format. The experiments were recorded in negative-ion mode with a MALDI LTQ-orbitrap XL (ThermoFisher) at 25 um/pixel of spatial resolution. We also uploaded three .ppt with a comparison between the eosin-hematoxilin images, the IHC (MelanA and HMB45) and the segmentation images
Files
ficheros imzml.zip
Additional details
Funding
- Basque Government
- Investigación Multidisciplinar del Melanoma Maligno. Identificación de nuevos biomarcadores de utilidad en el pronóstico y tratamiento del melanoma KK2017-041
- Basque Government
- Diagnóstico, pronóstico y tratamiento del cáncer: una nueva generación basada en lipidómica y desarrollo de vacunas personalizadas KK2020-00069
- Basque Government
- Grupos Consolidados IT1491-22