Published April 23, 2024 | Version v1.5
Software Open

LDWeaver

Creators

  • 1. University of Oslo and University of Melbourne

Description

LDWeaver accepts a sequence alignment (fasta) and its reference annotation (genbank or gff) as inputs and identifies linkage disequilibrium (LD) between pairs of variants (links) that is unusually high given the genomic distance between the pair. This high LD could be the result of co-selection or epistasis.

Notes

If you find LDWeaver helpful, please cite:

Files

Sudaraka88/LDWeaver-v1.5.zip

Files (39.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/Sudaraka88/LDWeaver/tree/v1.5 (URL)