open-AIMS/ADRIA.jl: v0.10.0

What's Changed

• Add .JuliaFormatter.toml to .gitignore by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/499
• Update viz.clustered_scenarios to allow confidence interval plot by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/482
• Deprecate run_scenarios(scens, dom, ...) by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/476
• Fix _time_labels missing last label by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/496
• Refactor viz.scenario by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/500
• CompatHelper: bump compat for SciMLBase to 2, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/504
• Update CSV.write writeheader parameter to header by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/506
• Fix bug causing Domain loading with RCP to error by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/511
• CompatHelper: bump compat for MLJ to 0.20, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/515
• Remove top_n parameter from usage by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/514
• Add function to find robust scenarios across several metrics by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/463
• Add :summary option to viz.scenarios by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/505
• Add support series and map binary clusters plots by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/521
• Fix scenarios subsetting now working by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/523
• Rename rs_input with scenarios by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/533
• Fix bug in how sensitivity.outcome_map() treats categorical variables. by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/491
• CompatHelper: bump compat for NCDatasets to 0.13, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/536
• Add interface function to query number of scenarios in result set by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/527
• Add summarize and turn per_loc and loc_trajectory into alias by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/537
• Add missing scenario analysis function definitions to analysis module by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/541
• Extract call to run scenarios inside tests to external function by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/540
• Broadcast _check_discrete inside update_params by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/539
• Adds a series of aggregation functions for location selection ranks by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/431
• Add functions for repeated tasks when performing location selection by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/434
• Update analysis docs with recent scenarios and clusters developments by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/545
• Resolve Out-of-Memory issues when working with larger spatial areas by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/542
• CompatHelper: add new compat entry for TOML at version 1, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/553
• CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/554
• Avoid assuming where the RCP column is when adjusting scenario spec by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/558
• Fix integer dims reference in location_selection_frequency() by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/563
• Add function to alter sampling bounds on parameters to specified value. by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/490
• Coral cover consistently represented as relative to coral habitable area by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/555
• Fix bug due to missing default_bounds in EnvironmentalLayer and Coral model components by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/569
• Prevent test_rs() from creating tmp dir inside test/data by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/576
• Visualizations to be agnostic to Makie backend by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/570
• Apply blue styleguide to some files by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/579
• Functions to plot spatial distributions of site selection frequencies by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/449
• Add functions used for location selection to separate decision module by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/571
• Update use of progress meter to resolve deprecation warning by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/581
• Add ability to perform convergence analysis by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/552
• Add separate weighting parameter for depth criteria by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/573
• Replace package NCDatasets by NetCDF by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/583
• Add conversion to scientific notation by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/574
• CompatHelper: add new compat entry for NetCDF at version 0.11, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/588
• Change approach to listing supported MCDA methods by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/593
• Use min-max normalisation for heat stress by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/595
• Remove defunct function for post processing results into power-BI friendly csv file by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/594
• Fix viz.scenarios bug introduced in changes to scenario_confint! usage by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/589
• Use min-max normalisation for heat stress by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/596
• Normalize sampled MCDA weights by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/582
• Handle cases where connectivity directories may be empty by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/597
• Remove list of ignored JMcDM methods by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/599
• Implement cyclone mortality scenarios by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/585
• CompatHelper: add new compat entry for DimensionalData at version 0.25, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/606
• CompatHelper: bump compat for Interpolations to 0.15, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/604
• CompatHelper: add new compat entry for YAXArrays at version 0.5, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/605
• Fix proportional_adjustment vector conversion computational error by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/607
• Fix treatment of categorical factors in regional sensitivity analysis by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/601
• Deactivated interventions should be considered separately by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/598
• Adjust language in architectural overview to match recent changes by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/612
• Add tests for figure creation by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/608
• Attach dummy wave and cyclone data by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/616
• CompatHelper: bump compat for SIRUS to 2, (keep existing compat) by @github-actions in https://github.com/open-AIMS/ADRIA.jl/pull/617
• Support RSA with large sample sizes by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/614
• Add more detail regarding sequence of events by @ConnectedSystems in https://github.com/open-AIMS/ADRIA.jl/pull/611
• Changes to dhw and wave logs to store scenario and site means and stds by @Rosejoycrocker in https://github.com/open-AIMS/ADRIA.jl/pull/623
• Fix bug introduced by SIRUS v2.0.1 by @Zapiano in https://github.com/open-AIMS/ADRIA.jl/pull/625

Full Changelog: https://github.com/open-AIMS/ADRIA.jl/compare/v0.9.0...v0.10.0