Published July 1, 2022 | Version v0.4
Software Open

SPATIAL MODELLING OF SOCIO-ECONOMIC FACTORS OF COVID-19 MORTALITY IN RUSSIA: data, R code and plots

  • 1. HSE University

Description

This repository contains the supplementary materials (code, data and plots) for the paper Kotov, E., Goncharov, R., Kulchitsky, Y., Molodtsova, V., Nikitin, B. (2022). Spatial Modelling of Key Regional-Level Factors of COVID-19 Mortality in Russia. GEOGRAPHY, ENVIRONMENT, SUSTAINABILITY, 15(2), 71–83. https://doi.org/10.24057/2071-9388-2021-076

Technical info (English)

Reproducing the analysis

If you want to re-run the analysis from scratch:

  1. Install R https://cran.r-project.org and RStudio https://www.rstudio.com.

  2. Extract all the files to a folder.

  3. Open the ru-covid19-regional-excess-mortality.Rproj file in RStudio.

  4. Open the paper/paper.Rmd file within RStudio file browser.

  5. Press Knit button at the top to run the analysis. All packages should install automatically, the analysis should run and you should get an regenerated paper/paper.html file.

Table of contents (English)

Contents of the supplementray materials

  • /codebook/codebook.xlsx - contains description of the variables

  • /paper - a folder with the main script for performing the analysis

    • paper/paper.Rmd - the main script that can be rendered into html or pdf file

    • paper/paper.html - the pre-rendered version of the analysis script - this is what you want to open if you just want to read the results summary and see the plots

  • /R - a folder with custom analysis functions and package installation scripts written in R

  • /data/ - data folder

    • region_borders_with_data.gpkg - GIS data set with all attributes and regional boundaries geometry

    • region_borders_with_data.gal - the spatial weights matrix file used for spatial autocorrelation tests and spatial modelling

    • regions_data.csv - a copy of the regions attributes in a plain-text csv file without regional boundaries geometry

  • /plots/ - folder with plots exported for the final paper

  • /summaries/ - folder with model summaries and coefficients

Files

e-kotov/ru-covid19-regional-excess-mortality-v0.4.zip

Files (59.5 MB)

Additional details

Related works

Is supplement to
Journal: 10.24057/2071-9388-2021-076 (DOI)
Is supplemented by
Computational notebook: https://www.ekotov.pro/ru-covid19-regional-excess-mortality/ (URL)

Funding

Ensuring balanced regional development during a pandemic with spatially differentiated regulation of socio-economic interaction, sectoral composition of the economy and local labour markets 20-04-60490
Russian Foundation for Basic Research

Software

Repository URL
https://github.com/e-kotov/ru-covid19-regional-excess-mortality
Programming language
R
Development Status
Inactive