Published June 3, 2024 | Version v2.4.0
Software Open

ytakemon/GRETTA: GRETTA 2.4.0

Creators

  • 1. Canada's Michael Smith Genome Sciences Centre, University of British Columbia

Description

  • Latest DepMap dataset 23Q4 is now available. See https://github.com/ytakemon/GRETTA/tree/main/DepMap_data_versions/ for more details.
  • list_mutations(), list_cancer_types(), extract_rna(), select_cell_lines(), and list_mutations() have been updated to accommodate different column names used in 23Q4.
  • plot_screen() now has new option to plot specific genes using the gene_list = argument. Please read ?plot_screen for more info.
  • Major bump. New function GI_screen_perms() has been added to perform permutation on GI screen results for p-value correction/

Files

ytakemon/GRETTA-v2.4.0.zip

Files (3.7 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/ytakemon/GRETTA/tree/v2.4.0 (URL)