Published June 3, 2024
| Version v2.4.0
Software
Open
ytakemon/GRETTA: GRETTA 2.4.0
Creators
- 1. Canada's Michael Smith Genome Sciences Centre, University of British Columbia
Description
- Latest DepMap dataset 23Q4 is now available. See https://github.com/ytakemon/GRETTA/tree/main/DepMap_data_versions/ for more details.
list_mutations()
,list_cancer_types()
,extract_rna()
,select_cell_lines()
, andlist_mutations()
have been updated to accommodate different column names used in 23Q4.plot_screen()
now has new option to plot specific genes using thegene_list =
argument. Please read?plot_screen
for more info.- Major bump. New function
GI_screen_perms()
has been added to perform permutation on GI screen results for p-value correction/
Files
ytakemon/GRETTA-v2.4.0.zip
Files
(3.7 MB)
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Additional details
Related works
- Is supplement to
- Software: https://github.com/ytakemon/GRETTA/tree/v2.4.0 (URL)