Mayrlab/scUTRquant: v0.5.0

What's Changed

• adds support for H5AD (AnnData) output by with https://github.com/Mayrlab/scUTRquant/pull/90
• adds support for Snakemake 8 with in https://github.com/Mayrlab/scUTRquant/pull/83
• updates environments to R 4.3 and Bioc 3.18 with https://github.com/Mayrlab/scUTRquant/pull/86
• freshens up the Rmd output with https://github.com/Mayrlab/scUTRquant/pull/89
• adds a version variable to the Snakefile with https://github.com/Mayrlab/scUTRquant/pull/89

Specification Extensions

• configuration YAML: there is now a output_format key that takes a list, currently limited to "sce" (default) and "h5ad" (experimental).
• target definition: targets have two new (optional) keys - tx_annots_csv and gene_annots_csv These are exclusively used by the output_format: h5ad branch of the pipeline.

Full Changelog: https://github.com/Mayrlab/scUTRquant/compare/v0.4.1...v0.5.0