Published May 13, 2016
| Version v1
Dataset
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Supplementary material 2 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579
Authors/Creators
- 1. University of Gothenburg, Gothenburg, Sweden
- 2. Real Jardín Botánico, Madrid, Spain
- 3. University of Tartu, Tartu, Estonia
- 4. Uppsala University, Uppsala, Sweden
- 5. University of Gothenburg, Göteborg, Sweden
- 6. Berlin Center for Genomics in Biodiversity Research, Berlin, Germany
- 7. University of Tartu Natural History Museum, Tartu, Estonia
Description
ITS multiple sequence alignment
: Explanation note: A multiple sequence alignment in the NEXUS format (Maddison et al. 1997) comprising all 63 matching ITS sequences, plus the three newly generated ones (KU356730, KU356731, and KU356732). The alignment was produced in MAFFT without manual adjustment (Katoh and Standley 2013). The alignment is composed of partial nSSU (bases 1-34 in the alignment), the full ITS1 (bases 35-678), the full 5.8S (bases 679-838), the full ITS2 (bases 839-1395), and partial nLSU (bases 1396-end). The SRP RNA occupies position 203-474 in the alignment. The alignment is provided for overview purposes only; the two-order nature of the taxa (Boletales and Russulales) coupled with the high variability of the ITS region jointly mean that the alignment will not be suited for phylogenetic inference.
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Additional details
Related works
- Is supplement to
- 10.3897/mycokeys.13.8579 (DOI)