Published July 17, 2026 | Version v1.29.0

monarch-initiative/monarch-app: v1.29.0

  • 1. University of Colorado Department of Biomedical Informatics
  • 2. UNC Chapel Hill
  • 3. Lawrence Berkeley National Lab
  • 4. Lawrence Berkeley National Laboratory
  • 5. semanticly.ai
  • 6. CU Anschutz, DBMI
  • 7. @anthropics
  • 8. RWTH Aachen University
  • 9. Translational and Integrative Sciences Lab
  • 10. CU Anschutz
  • 11. LBNL

Description

What's Changed

  • Deduplicate Causal Genes / causes_disease in node header (#1328) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1329
  • Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1325
  • Show dismech pathographs on disease and gene pages (#1318) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1324
  • Surface Mondo related_to disease↔X relationships in node headers (#1326) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1327
  • Add opt-in in-process DuckDB similarity backend (ducksim) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1339
  • fix: re-raise caught ValidationError in parse_associations by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1323
  • Mondo node-header relationships: review follow-ups (#1326) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1341
  • Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1340
  • fix(ducksim): dedupe entity-phenotype associations (jaccard/phenodigm 500s) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1342
  • test(ducksim): invariant/metamorphic + API-contract tests (red until #1342) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1343
  • feat(grounding): add optional CURIE prefix and biolink category filters by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1354
  • Make Claude Code Review on-demand instead of auto-firing on every PR/commit by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1363
  • Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1346
  • Add ClinGen linkout to disease Patient and Clinical Resources by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1344
  • [bot] Use the semanticsql CDN for the HP semsql download (off raw bbop-sqlite S3) by @kltm in https://github.com/monarch-initiative/monarch-app/pull/1362
  • fix(pathograph): render node text as svg instead of foreignObject by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1365
  • fix(search): format taxon labels as italic scientific names (#1350) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1351
  • Update Resource Data by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1345
  • fix(pathograph): render for diseases/genes with no phenotype associations by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1366
  • fix: reflect GA4GH endorsement status on Phenopackets and Mondo pages by @varun-divya in https://github.com/monarch-initiative/monarch-app/pull/1338

New Contributors

  • @kltm made their first contribution in https://github.com/monarch-initiative/monarch-app/pull/1362

Full Changelog: https://github.com/monarch-initiative/monarch-app/compare/v1.28.0...v1.29.0

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monarch-initiative/monarch-app-v1.29.0.zip

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