Published July 17, 2026
| Version v1.29.0
Software
Open
monarch-initiative/monarch-app: v1.29.0
Authors/Creators
- varun_divya
- Kevin Schaper
- Vincent Rubinetti1
- Patrick Golden2
- Sierra Moxon3
- Corey Cox
- Harry Caufield4
- Nico Matentzoglu5
- Faisal Alquaddoomi6
- Carlo Kroll
- Claude7
- madanucd
- Nomi Harris4
- Justin Reese3
- Charles Tapley Hoyt8
- Sarah Gehrke9
- Aaron Odell
- Bradford Powell
- Chris Mungall4
- Mónica Muñoz Torres10
- Patrick Kalita4
- kltm11
- 1. University of Colorado Department of Biomedical Informatics
- 2. UNC Chapel Hill
- 3. Lawrence Berkeley National Lab
- 4. Lawrence Berkeley National Laboratory
- 5. semanticly.ai
- 6. CU Anschutz, DBMI
- 7. @anthropics
- 8. RWTH Aachen University
- 9. Translational and Integrative Sciences Lab
- 10. CU Anschutz
- 11. LBNL
Description
What's Changed
- Deduplicate Causal Genes / causes_disease in node header (#1328) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1329
- Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1325
- Show dismech pathographs on disease and gene pages (#1318) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1324
- Surface Mondo related_to disease↔X relationships in node headers (#1326) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1327
- Add opt-in in-process DuckDB similarity backend (ducksim) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1339
- fix: re-raise caught ValidationError in parse_associations by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1323
- Mondo node-header relationships: review follow-ups (#1326) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1341
- Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1340
- fix(ducksim): dedupe entity-phenotype associations (jaccard/phenodigm 500s) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1342
- test(ducksim): invariant/metamorphic + API-contract tests (red until #1342) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1343
- feat(grounding): add optional CURIE prefix and biolink category filters by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1354
- Make Claude Code Review on-demand instead of auto-firing on every PR/commit by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1363
- Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1346
- Add ClinGen linkout to disease Patient and Clinical Resources by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1344
- [bot] Use the semanticsql CDN for the HP semsql download (off raw bbop-sqlite S3) by @kltm in https://github.com/monarch-initiative/monarch-app/pull/1362
- fix(pathograph): render node text as svg instead of foreignObject by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1365
- fix(search): format taxon labels as italic scientific names (#1350) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1351
- Update Resource Data by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1345
- fix(pathograph): render for diseases/genes with no phenotype associations by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1366
- fix: reflect GA4GH endorsement status on Phenopackets and Mondo pages by @varun-divya in https://github.com/monarch-initiative/monarch-app/pull/1338
New Contributors
- @kltm made their first contribution in https://github.com/monarch-initiative/monarch-app/pull/1362
Full Changelog: https://github.com/monarch-initiative/monarch-app/compare/v1.28.0...v1.29.0
Files
monarch-initiative/monarch-app-v1.29.0.zip
Files
(81.5 MB)
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Additional details
Related works
- Is supplement to
- Software: https://github.com/monarch-initiative/monarch-app/tree/v1.29.0 (URL)
Software
- Repository URL
- https://github.com/monarch-initiative/monarch-app