nf-core

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Published October 10, 2023 | Version 2.5.0
Software Open

nf-core/mhcquant: mhcquant 2.5.0 - Angry Bird

Authors/Creators

  • 1. @theislab @schillerlab @scverse @laminlabs
  • 2. Boehringer Ingelheim
  • 3. @seqeralabs
  • 4. @seqeralabs | Stockholm
  • 5. German Human Genome-Phenome Archive
  • 6. QBiC @qbicsoftware
  • 7. Robert Bosch GmbH

Description

Added
  • #267 Support for brukers tdf format by adding tdf2mzml converter
  • #269 DeepLC retention time prediction (shout out to @steffenlem)
  • #270 MS2PIP peak intensity prediction (shout out to @steffenlem)
  • #271 Added OpenMS FileFilter to clean mzml after parsing to remove artifacts like empty spectra or precursors with charge 0 (optional)
  • Made file extension check case insensitive
  • Added option to provide a default comet parameters file @steffenlem
  • #273 Optimize resource allocations
  • https://github.com/nf-core/mhcquant/pull/274 Template update 2.9
  • #280 Improved quantification such that merged FDR-filtered runs can be quantified properly
  • https://github.com/nf-core/mhcquant/pull/282 Template update 2.10
Fixed Dependencies
  • #266 Switched from OpenMS version 2.8.0 to newest version 3.0.0
  • #266 Bumped ThermoRawFileParser version from 1.4.0 to 1.4.2
Deprecated
  • #280 OpenMS RT prediction

Files

nf-core/mhcquant-2.5.0.zip

Files (4.0 MB)

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md5:d1df97452116ad77839af9451fedbcaf
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Additional details

Related works

Is supplement to
https://github.com/nf-core/mhcquant/tree/2.5.0 (URL)