Published October 10, 2023
| Version v1
Dataset
Open
Benchmark dataset for CATH hierarchical clustering tools (GeMMA/FunFHMMEr, MARC, FRAN and eMMA)
Authors/Creators
- 1. University College London
Description
Benchmark dataset for CATH SuperFamily 3.40.50.620 (HUPS).
Contains Functional Families alignments and Hidden Markov Models generated by GeMMA/FunFHMMER, MARC, FRAN and CATH-eMMA and Python code used to assess their quality (EC purity, DOPS, Neff) and intermediate steps by the MARC and FRAN pipelines (pooling, randomisation, renaming).
3.40.50.620_embedded.pt includes embeddings for the HUPs superfamily generated using the ESM2 Protein Language Model.
Files
Files
(41.2 MB)
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md5:433547804445216fa7045c51f35657ab
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