Release Summary: v.0.5.0

This release modernizes BAMdash's configuration and build system, adds a multi-reference master page with offline HTML packaging, and introduces a comprehensive test suite plus CI workflow.

New features:

• TOML-based configuration (config.toml) that can be supplied via CLI arguments, replacing the old setup/args-based configuration
• Master HTML page for multi-reference reports, providing a combined overview across references
• --offline flag to control whether the Plotly JS is bundled into the exported HTML
• Structured logging across command, data, and plotting modules
• Comprehensive test suite (tests/) and GitHub Actions CI workflow with Dependabot config

Bug fixes:

• Fixed a multi-GenBank bug in reference handling
• Fixed jitter in plotting
• Changed y-axis from autorange to fixed range

Improvements:

• Visual overhaul of plots and data handling
• Migrated project metadata from setup.py to pyproject.toml
• Argument cleanup and validation in command.py
• Ruff linting fixes across the plotting module
• Replaced GIF example with a PNG example in the README

Breaking changes:

• Dropped Python 3.9 and 3.10 support
• CLI arguments changed (renamed/restructured); existing invocations may need updating
• Configuration now provided via TOML/args rather than the previous setup-based format