Published October 5, 2023
| Version v1.0
Journal article
Open
Genomic profiling of subcutaneous patient-derived xenografts reveals immune constraints on tumor evolution in childhood solid cancer
Creators
- 1. Greehey Children's Cancer Research Institute, University of Texas Health Science Center, San Antonio, TX, USA
Description
The source code of PDX analysis pipeline for DNA and RNA sequencing:
DNA: trim_galore, disambiguate, bwa-mem, strelka-mutect-varscan, sequenza-cnvkit-pureCN
RNA: trim_galore, disambiguate, kallisto-RSEM, HTseq, RNAseQC, STARfusion-pyPRADA,
Notes
Github: https://github.com/fnhe/PediatricSolidTumorPDX
Files
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