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Published October 3, 2023 | Version 1.0.1
Software Open

akikuno/cstag: 1.0.1

Authors/Creators

  • 1. University of Tsukuba

Description

  • [x] Made changes in consensus to not consider N due to insufficient read numbers.
cs_tags = [
    '=A*cg=G+aa=T-ac=G',
    '*cg=G+aa=T-ac=G',
    '=G-t=ACG'
    ]
positions = [10, 11, 12]

cstag.consensus(cs_tags, positions)
# result:   =N*cg=G+aa=T-ac=G
# expected: =A*cg=G+aa=T-ac=G
  • [x] Modified consensus to split the deletion tags.
    • Added expand_deletion_tags to split the deletions.
cs_tags = [
    '=A*cg=G+aa=T-ac=G',
    '*cg=G+aa=T-ac=G',
    '=G-t=ACG'
    ]
positions = [10, 11, 12]

cstag.consensus(cs_tags, positions)
# result:   =N*cg=G+aa=T-ac=GN
# expected: =N*cg=G+aa=T-ac=G
  • [x] Tried other libraries as installing weasyprint is challenging on mac and windows. However, continued using weasyprint as CSS was not applied.
    • fpdf2
    • borb
    • xhtml2pdf

Files

akikuno/cstag-1.0.1.zip

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