Published May 8, 2023
| Version v0.6.2
Software
Open
TRON-Bioinformatics/splice2neo: Release v0.6.2
Authors/Creators
Description
- ensure correct exon usage in MMSplice annotation (get_exon_skipping_junction / get_exon_inclusion_junction) by comparing genomic location of exons in MMSplice output and genomic location in database
- two functions to filter for unique junctions based on mut_id, junc_id and tx_id based on the highest effect score (unique_mut_junc() , unique_junc_mmsplice() )
- Readme now contains information how to optionally consider gene annotation in formatting of SpliceAI and Pangolin results
- combine_mut_junc() now merges based on mut_id, junc_id, tx_id again. It is recommended to apply the new uniqueness functions (unique_mut_junc() , unique_junc_mmsplice() ) before combining the data
Files
TRON-Bioinformatics/splice2neo-v0.6.2.zip
Files
(421.5 kB)
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Additional details
Related works
- Is supplement to
- https://github.com/TRON-Bioinformatics/splice2neo/tree/v0.6.2 (URL)