Published April 8, 2022 | Version 0.5.0
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TRON-Bioinformatics/splice2neo: Release v0.5.0

Authors/Creators

Description

  • intron rentetion events are now supported by add_context_seq(). the resulting context sequence covers the complete intron instead of the exon/intron boundary only. Instead of a the junction position in the cts_seq, the positions are given in form of an interval in the cts_junc_pos column for intron retentions. (0,start_IR, end_IR, end_cts)
  • add_peptide() was adjusted for intron rententions
  • more tests were added for several functions
  • fix small bug in annotate_spliceai_junction() that led to annotation with same transcript

Files

TRON-Bioinformatics/splice2neo-0.5.0.zip

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Additional details

Related works

Is supplement to
https://github.com/TRON-Bioinformatics/splice2neo/tree/0.5.0 (URL)