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Published July 25, 2017 | Version v1.17.2
Software Open

broadinstitute/viral-ngs: v1.17.2

Authors/Creators

  • 1. Broad Institute
  • 2. Broad Institute of MIT and Harvard
  • 3. MIT
  • 4. @broadinstitute
  • 5. DNAnexus

Description

Changed:

  • Improved HiSeq X / HiSeq 4000 compatibility: broken symlinks are now removed from Illumina lane directories if present. This is helpful for HiSeq-X/4000 systems, which write out a single s.locs file for cluster locations rather than per-tile location files. Picard's CheckIlluminaDirectory can create symlinks that take the place of per-tile *.locs files, however these links can break when runs are moved between systems. The change in this release of viral-ngs allows broken links to be removed and corrected.
  • CheckIlluminaDirectory is now called on each call to illumina_demux to check run directories for validity prior to demultiplexing

Files

broadinstitute/viral-ngs-v1.17.2.zip

Files (46.3 MB)

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md5:e6cd7fcf3b09e221504563e362cf7a74
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Additional details

Related works

Is supplement to
https://github.com/broadinstitute/viral-ngs/tree/v1.17.2 (URL)