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Published September 14, 2023 | Version 0.6.2
Software Open

akikuno/cstag: 0.6.2

Authors/Creators

  • 1. University of Tsukuba

Description

New Features Core Enhancements

  • Enhanced cstag.to_vcf to support multiple cs_tags (list[str]). This update introduces additional headers and content for better data representation:

    INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> INFO=<ID=RD,Number=1,Type=Integer,Description="Depth of Reference Allele"> INFO=<ID=AD,Number=1,Type=Integer,Description="Depth of Alternate Allele"> INFO=<ID=VAF,Number=A,Type=Float,Description="Variant Allele Frequency (AD/DP)">

  • Introduced cstag.to_sequence for reconstructing subsequences.

Supplementary Features
  • Added validate_cs_tag for CS tag validation.
  • Introduced validate_pos for position validation.
  • Implemented normalize_positions within cstag.consensus.
  • Added Vcf and VcfInfo classes to to_vcf.
Maintenance Updates
  • Revised normalize_read_lengths to eliminate deque output.
  • Debugged to_html to properly handle =N.

Files

akikuno/cstag-0.6.2.zip

Files (1.0 MB)

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md5:0b9eeff02606bf46fb2e15891658a3b8
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Additional details

Related works

Is supplement to
https://github.com/akikuno/cstag/tree/0.6.2 (URL)