Resources bundle for somatic workflow using HiFi reads

The following files are included in the resource bundle.

├── chr.bed
├── GCA_000001405.15_GRCh38_no_alt_analysis_set_maskedGRC_exclusions_v2.fasta
├── GCA_000001405.15_GRCh38_no_alt_analysis_set_maskedGRC_exclusions_v2.fasta.fai
├── human_GRCh38_no_alt_analysis_set.trf.bed
├── refFlat.hg38.txt
├── sniffles_all_non_germline.nosamples.vcf.gz
└── sniffles_all_non_germline.nosamples.vcf.gz.tbi

For the Sniffles non_germline VCF, please cite the Human Pangenome Project paper: https://www.nature.com/articles/s41586-022-04601-8. Briefly, Sniffles 2.0.7 were used to generate a joint-call VCF from 118 control samples with the "--non-germline" flag (all other parameters remain default).