Published September 7, 2023
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--Molecular--and--acoustic--evidence--support--the--species--status--of--Anthus rubescens rubescens and--Anthus [rubescens] japonicus--(Passeriformes:--Motacillidae)
Authors/Creators
- 1. CEFE, CNRS, Univ Montpellier, EPHE, IRD, Montpellier, France
- 2. LPO France, 1 rue Toufaire, 17300 Rochefort, France & paulcoiffard41@gmail.com; https://orcid.org/0000-0002-5109-8429
- 3. Animal Ecology, Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden & Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China & per.alstrom@ebc.uu.se; https://orcid.org/0000-0001-7182-2763
- 4. The Sound Approach, Carey House, Carey, Wareham, Dorset, BH20 7PG, United Kingdom & magnus.robb@me.com; https://orcid.org/0000-0001-9995-6667
- 5. CEFE, CNRS, Univ Montpellier, EPHE, IRD, Montpellier, France & paul.dufour80@gmail.com; https://orcid.org/0000-0002-7940-9997
- 6. CEFE, CNRS, Univ Montpellier, EPHE, IRD, Montpellier, France & pierre-andre.crochet@cefe.cnrs.fr; https://orcid.org/0000-0002-0422-3960
Description
Doniol-Valcroze, Paul, Coiffard, Paul, Alström, Per, Robb, Magnus, Dufour, Paul, Crochet, Pierre-André (2023): --Molecular--and--acoustic--evidence--support--the--species--status--of--Anthus rubescens rubescens and--Anthus [rubescens] japonicus--(Passeriformes:--Motacillidae). Zootaxa 5343 (2): 173-192, DOI: 10.11646/zootaxa.5343.2.4, URL: http://dx.doi.org/10.11646/zootaxa.5343.2.4
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- urn:lsid:zoobank.org:pub:2EEA3FB3-825B-45A7-AFB4-165FB118424C
- LSID
- urn:lsid:plazi.org:pub:3407FFDCFFC5ED5DDC4BFFAEFF9AA560
References
- Alstrom, P. & Mild, K. (1996) The identification of Rock, Water and Buff-bellied pipits. Alula, 4, 161-175.
- Alstrom, P. & Mild, K. (2003) Pipits and Wagtails of Europe, Asia and North America. Christopher Helm, London and Princeton University Press, Princeton, New Jersey, 496 pp.
- Alstrom, P. & Ranft, R. (2003) The use of sounds in avian systematics and the importance of bird sound archives. Bulletin of the British Ornithologists' Club, 123, 114-135.
- Alstrom, P. & Odeen, A. (2002) Incongruence between mitochondrial DNA, nuclear DNA and non-molecular data in the avian genus Motacilla: implications for estimates of species phylogenies. In: Alstrom, P., Species Limits and Systematics in Some Passerine Birds. PhD Thesis, Uppsala University, Uppsala, pp. 2-18.
- Alstrom, P., Olsson, U., Rasmussen, P.C., Yao, C.-T., Ericson, P.G.P. & Sundberg, P. (2007) Morphological, vocal and genetic divergence in the Cettia acanthizoides complex (Aves: Cettiidae). Zoological Journal of the Linnean Society, 149, 437- 452. https://doi.org/10.1111/j.1096-3642.2007.00250.x
- Alstrom, P., Rasmussen, P.C., Olsson, U. & Sundberg, P. (2008) Species delimitation based on multiple criteria: the Spotted Bush Warbler Bradypterus thoracicus complex (Aves, Megaluridae). Zoological Journal of the Linnean Society, 154, 291-307. https://doi.org/10.1111/j.1096-3642.2008.00418.x
- Alstrom, P., Xia, C., Rasmussen, P.C., Olsson, U., Dai, B., Zhao, J., Leader, P.J., Carey, G.J., Dong, L., Cai, T., Holt, P.I., Le Manh, H., Song, G., Liu, Y., Zhang, Y. & Lei, F. (2015a) Integrative taxonomy of the Russet Bush Warbler Locustella mandelli complex reveals a new species from central China. Avian Research, 6, 9. https://doi.org/10.1186/s40657-015-0016-z
- Alstrom, P., Jonsson, K., Fjeldsa, J., Odeen, A., Ericson, P.G.P. & Irestedt, M. (2015b) Dramatic niche shifts and morphological change in two insular bird species. Royal Society Open Science 2: 140364. https://doi.org/10.1098/rsos.140364
- Alstrom, P., Rasmussen, P.C., Zhao, C., Xu, J., Dalvi, S., Cai, T., Guan, Y., Zhang, R., Kalyakin, M.V., Lei, F. & Olsson, U. (2016) Integrative taxonomy of the Plain-backed Thrush (Zoothera mollissima) complex (Aves, Turdidae) reveals cryptic species, including a new species. Avian Research, 7, 1. https://doi.org/10.1186/s40657-016-0037-2
- Alstrom, P., Rasmussen, P.C., Xia, C., Zhang, L., Liu, C., Magnusson, J., Shafaeipour, A. & Olsson, U. (2021a) Morphology, vocalizations, and mitochondrial DNA suggest that the Graceful Prinia is two species. Ornithology, 138 (2), ukab014. https://doi.org/10.1093/ornithology/ukab014
- Alstrom, P., van Linschooten, J., Donald, P.F., Sundev, G., Mohammadi, Z., Ghorbani, F., Shafaeipour, A., van den Berg, A., Robb, M., Aliabadian, M., Wei, C., Lei, F., Oxelman, B. & Olsson, U. (2021b) Multiple species delimitation approaches applied to the avian lark genus Alaudala. Molecular Phylogenetics and Evolution, 154, 106994. https://doi.org/10.1016/j.ympev.2020.106994
- Bairlein, F., Norris, D.R., Nagel, R., Bulte, M., Voigt, C.C., Fox, J.W., Hussel, D.J.T. & Schmaljohann, H. (2012) Crosshemisphere migration of a 25 g songbird. Biology Letters, 8 (4), 505-507. https://doi.org/10.1098/rsbl.2011.1223
- Battey, C.J. & Klicka, J. (2017) Cryptic speciation and gene flow in a migratory songbird species complex: Insights from the Red-eyed Vireo (Vireo olivaceus). Molecular Phylogenetics and Evolution, 113, 67-75. https://doi.org/10.1016/j.ympev.2017.05.006
- BirdLife International (2022) Species factsheet: Anthus rubescens. Available from: http://datazone.birdlife.org/species/factsheet/ buff-bellied-pipit-anthus-rubescens (accessed 25 July 2022)
- Center for Conservation Bioacoustics (2016) Raven Lite: Interactive Sound Analysis Software (Version 2.0.1). Cornell Lab of Ornithology, Ithaca, New York, Computer Software. Available from: http://ravensoundsoftware.com/ (accessed 18 July 2023)
- Clements, J.F. (2007) Clements Checklist of Birds of the World. Comstock Publishing Associates/Cornell University Press, Ithaca, New York, 864 pp.
- Clements, J.F., Schulenberg, T.S., Iliff, M.J., Fredericks, T.A., Gerbracht, J.A., Lepage, D., Billerman, S.M., Sullivan, B.L. & Wood, C.L. (2022) The eBird/Clements Checklist of Birds of the World. Version 2022. Available from: https://www.birds. cornell.edu/clementschecklist/download/ (accessed 30 January 2023)
- Collinson, J.M., Dufour, P., Hamza, A.A., Lawrie, Y., Elliott, M., Barlow, C. & Crochet, P. A. (2017) When morphology is not reflected by molecular phylogeny: the case of three 'orange-billed terns' Thalasseus maximus, Thalasseus bergii and Thalasseus bengalensis (Charadriiformes: Laridae). Biological Journal of the Linnean Society, 121 (2), 439-445. https://doi.org/10.1093/biolinnean/blw049
- Cramp, S. & Simmons, K.E.L. (1983) The Birds of the Western Palearctic. Vol. V. Oxford University Press, Oxford, 1136 pp.
- Delmore, K.E. & Irwin, D.E. (2014) Hybrid songbirds employ intermediate routes in a migratory divide. Ecology Letters, 17 (10), 1211-1218. https://doi.org/10.1111/ele.12326
- de Queiroz, K. (2007) Species concepts and species delimitation. Systematic Biology, 56(6), 879-886. https://doi.org/10.1080/10635150701701083
- Dor, R., Safran, R.J., Sheldon, F.H., Winkler, D.W. & Lovette, I.J. (2010) Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex. Molecular Phylogenetics and Evolution, 56 (1), 409-418. https://doi.org/10.1016/j.ympev.2010.02.008
- Dufresnes, C. & Jablonski, D. (2022) A genomics revolution in amphibian taxonomy. Science, 377 (6612), 1272-1272. https://doi.org/10.1126/science.ade5002
- Dray, S. & Dufour, A.-B. (2007) The ade4 Package: implementing the duality diagram for ecologists. Journal of Statistical Software, 22 (4), 1-20. https://doi.org/10.18637/jss.v022.i04
- Drovetski, S.V., Reeves, A.B., Red'kin, Y.A., Fadeev, I.V., Koblik, E.A., Sotnikov, V.N. & Voelker, G. (2018) Multi-locus reassessment of a striking discord between mtDNA gene trees and taxonomy across two congeneric species complexes. Molecular Phylogenetics and Evolution, 120, 43-52. https://doi.org/10.1016/j.ympev.2017.11.023
- Farnsworth, A. & Lovette, I.J. (2008) Phylogenetic and ecological effects on interspecific variation in structurally simple avian vocalizations. Biological Journal of the Linnean Society, 94 (1), 155-173. https://doi.org/10.1111/j.1095-8312.2008.00973.x
- Fijen, T.P. (2014) Flight call identification of Rock Pipit and Water Pipit. Dutch Birding, 36, 87-95.
- Garner, M., Perlman, Y., Kiat, Y. & Collinson, J.M. (2015) Water pipits: Three species rather than one? British Birds, 108 (1), 42-48.
- Gill, F., Donsker, D. & Rasmussen, P. (Eds.) (2023) IOC World Bird List. Version 13.1. Available from: https://www. worldbirdnames.org/new/ (accessed 18 July 2023)
- Gwee, C.Y., Eaton, J.A., Garg, K.M., Alstrom, P., Van Balen, S., Hutchinson, R.O., Prawiradilaga, D.M., Le, M.H. & Rheindt, F.E. (2019) Cryptic diversity in Cyornis (Aves: Muscicapidae) jungle-flycatchers flagged by simple bioacoustic approaches. Zoological Journal of the Linnean Society, 186 (3), 725-741. https://doi.org/10.1093/zoolinnean/zlz003
- Harris, R.B., Alstrom, P., Odeen, A. & Leache, A.D. (2018) Discordance between genomic divergence and phenotypic variation in a rapidly evolving avian genus (Motacilla). Molecular Phylogenetics and Evolution, 120, 183-195. https://doi.org/10.1016/j.ympev.2017.11.020
- Helbig, A.J., Knox, A.G., Parkin, D.T., Sangster, G. & Collinson, M. (2002) Guidelines for assigning species rank. Ibis, 144 (3), 518-525. https://doi.org/10.1046/j.1474-919X.2002.00091.x
- Hopkins, D.M. (1959) Cenozoic history of the Bering land bridge. Science, 129 (3362), 1519-1528. https://doi.org/10.1126/science.129.3362.1519
- Irwin, D.E., Irwin, J.H., Greenberg, R. & Marra, P.P. (2005) Siberian migratory divides: the role of seasonal migration in speciation. In: Greenberg, R. & Marra, P.P. (Eds.), Birds of Two Worlds: the Ecology and Evolution of Migration. Johns Hopkins University Press, Baltimore, Maryland, pp. 27-40.
- Hendricks, P. & Verbeek, N.A. (2020) American Pipit (Anthus rubescens). Version 1.0. In: Billerman, S.M. (Ed.), Birds of the World. Cornell Lab of Ornithology, Ithaca, New York. [program] https://doi.org/10.2173/bow.amepip.01
- Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547-1549. https://doi.org/10.1093/molbev/msy096
- Lee, C.-T. & Birch, A. (2002) Notes on the distribution, vagrancy, and field identification of American Pipit and "Siberian Pipit". North American Birds, 56, 389-398.
- Mallet, J. (2008) Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation. Philosophical Transactions of the Royal Society B: Biological Sciences, 363 (1506), 2971-2986. https://doi.org/10.1098/rstb.2008.0081
- Marler, P. (2004) Bird calls: their potential for behavioral neurobiology. Annals of the New York Academy of Sciences, 1016, 31-44. https://doi.org/10.1196/annals.1298.034
- Martin, R. (2013) AVESRARES, Identification of Olive-backed and Tree Pipit by call. Available from: https://avesrares. wordpress.com/2013/09/27/identification-of-olive-backed-and-tree-pipit-by-call/ (accessed 30 January 2023)
- Mayr, R. (1942) Systematics and the Origin of Species. Harvard University Press, Cambridge, Massachusetts, 372 pp.
- McLaughlin, J.F., Faircloth, B.C., Glenn, T.C. & Winker, K. (2020) Divergence, gene flow, and speciation in eight lineages of trans-Beringian birds. Molecular Ecology, 29 (18), 3526-3542. https://doi.org/10.1111/mec.15574
- Nabholz, B., Lanfear, R. & Fuchs, J. (2016) Body mass-corrected molecular rate for bird mitochondrial DNA. Molecular Ecology, 25 (18), 4438-4449. https://doi.org/10.1111/mec.13780
- Ng, E.Y., Eaton, J.A., Verbelen, P., Hutchinson, R.O. & Rheindt, F.E. (2016) Using bioacoustic data to test species limits in an Indo-Pacific Island radiation of Macropygia cuckoo doves. Biological Journal of the Linnean Society, 118 (4), 786-812. https://doi.org/10.1111/bij.12768
- Oksanen, J., Blanchet, F.J., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., Minchin, P.R., O'Hara, R.B., Simpson, G.L., Solymos, P., Henry, M., Stevens, H., Szoecs, E. & Wagner, H. (2019) vegan: Community Ecology Package. R Package Version 2.5-6. Available from: https://CRAN.R-project.org/package=vegan (accessed 18 July 2023)
- Packert, M., Martens, J., Sun, Y.H. & Veith, M. (2004) The radiation of the Seicercus burkii complex and its congeners (Aves: Sylviidae): molecular genetics and bioacoustics. Organisms Diversity & Evolution, 4 (4), 341-364. https://doi.org/10.1016/j.ode.2004.06.002
- Packert, M. (2018) Song: The learned language of three major bird clades. In: Tietze, D. (Ed.), Bird Species. Springer, Cham, pp. 75-94. https://doi.org/10.1007/978-3-319-91689-7_5
- Padial, J.M., Miralles, A., De la Riva, I. & Vences, M. (2010) The integrative future of taxonomy. Frontiers in Zoology, 7 (1), 1-14. https://doi.org/10.1186/1742-9994-7-16
- Pavia, M., Drovetski, S.V., Boano, G., Conway, K.W., Pellegrino, I. & Voelker, G. (2021) Elevation of two subspecies of Dunnock Prunella modularis to species rank. Bulletin of the British Ornithologists' Club, 141 (2), 199-210. https://doi.org/10.25226/bboc.v141i2.2021.a10
- Pavlova, A., Zink, R.M., Drovetski, S.V., Red'kin, Y. & Rohwer, S. (2003) Phylogeographic patterns in Motacilla flava and Motacilla citreola: species limits and population history. The Auk, 120 (3), 744-758. https://doi.org/10.1093/auk/120.3.744
- Pertierra, L.R., Segovia, N.I., Noll, D., Martinez, P.A., Pliscoff, P., Barbosa, A., Aragon, P., Raya Rey, A., Pistorius, P., Trathan, P., Polanowski, A., Bonadonna, F., Le Bohec, C., Bi, K., Whang-Claypool, C.Y., Gonzalez-Acuna, D., Dantas, G.P.M, Bowie, R.C.K., Poulin, E. & Vianna, J.A. (2020) Cryptic speciation in gentoo penguins is driven by geographic isolation and regional marine conditions: Unforeseen vulnerabilities to global change. Diversity and Distributions, 26 (8), 958-975. https://doi.org/10.1111/ddi.13072
- Peters, J.L., McCracken, K.G., Pruett, C.L., Rohwer, S., Drovetski, S.V., Zhuravlev, Y.N., Kulikova, I., Gibson, D.D. & Winker, K. (2012) A parapatric propensity for breeding precludes the completion of speciation in Common Teal (Anas crecca, sensu lato). Molecular Ecology, 21 (18), 4563-4577. https://doi.org/10.1111/j.1365-294X.2012.05711.x
- Pietersen, D.W., McKechnie, A.E., Jansen, R., Little, I.T. & Bastos, A.D. (2019) Multi-locus phylogeny of African pipits and longclaws (Aves: Motacillidae) highlights taxonomic inconsistencies. Ibis, 161 (4), 781-792. https://doi.org/10.1111/ibi.12683
- Porter, R. & Aspinall, S. (2013) Birds of the Middle East. Bloomsbury Publishing, London, 400 pp.
- Porter, C.K. & Benkman, C.W. (2019) Character displacement of a learned behaviour and its implications for ecological speciation. Proceedings of the Royal Society B, 286 (1908), 20190761. https://doi.org/10.1098/rspb.2019.0761
- Potvin, D.A., Parris, K.M. & Mulder, R.A. (2013) Limited genetic differentiation between acoustically divergent populations of urban and rural silvereyes (Zosterops lateralis). Evolutionary Ecology, 27 (2), 381-391. https://doi.org/10.1007/s10682-012-9591-1
- Price, T. (2008) Speciation in Birds. Roberts & Co., Greenwood Village, Colorado, 470 pp.
- Reeves, A.B., Drovetski, S.V. & Fadeev, I.V. (2008) Mitochondrial DNA data imply a stepping-stone colonization of Beringia by Arctic Warbler Phylloscopus borealis. Journal of Avian Biology, 39 (5), 567-575. https://doi.org/10.1111/j.0908-8857.2008.04421.x
- Rubinoff, D. & Holland, B.S. (2005) Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. Systematic Biology, 54 (6), 952-961. https://doi.org/10.1080/10635150500234674
- Safran, R.J., Scordato, E.S.C., Wilkins, M.R., Hubbard, J.K., Jenkins, B.R., Albrecht, T., Flaxman, S.M., Karaardic, H., Vortman, Y., Lotem, A., Nosil, P., Pap, P., Shen, S., Chan, S.-F., Parchman, T.L. & Kane, N.C. (2016) Genome-wide differentiation in closely related populations: the roles of selection and geographic isolation. Molecular Ecology, 25 (16), 3865-3883. https://doi.org/10.1111/mec.13740
- Saitoh, T., Alstrom, P., Nishiumi, I., Shigeta, Y., Williams, D., Olsson, U. & Ueda, K. (2010) Old divergences in a boreal bird supports long-term survival through the Ice Ages. BMC Evolutionary Biology, 10 (1), 1-13. https://doi.org/10.1186/1471-2148-10-35
- Sangster, G. (2022) The taxonomic status of Palearctic and Nearctic populations of Northern Goshawk Accipiter gentilis (Aves, Accipitridae): New evidence from vocalisations. Vertebrate Zoology, 72, 445-456. https://doi.org/10.3897/vz.72.e85419
- Shirihai, H. & Svensson, L. (2018) Handbook of Western Palearctic Birds. Vol. 1. Passerines: Larks to Warblers. Bloomsbury Publishing, London, 3312 pp.
- Sin, Y.C.K., Eaton, J.A., Hutchinson, R.O. & Rheindt, F.E. (2022) Re-assessing species limits in a morphologically cryptic Australasian kingfisher lineage (Coraciiformes: Halcyonidae) using bioacoustic data. Biological Journal of the Linnean Society, 136 (4), 489-505. https://doi.org/10.1093/biolinnean/blac047
- Song, G., Zhang, R., Alstrom, P., Irestedt, M., Cai, T., Qu, Y., Ericson, P.G.P., Fjeldsa, J. & Lei, F. (2018) Complete taxon sampling of the avian genus Pica (magpies) reveals ancient relictual populations and synchronous Late-Pleistocene demographic expansion across the Northern Hemisphere. Journal of Avian Biology, 49 (2), jav-01612. https://doi.org/10.1111/jav.01612
- Speybroeck, J., Beukema, W., Dufresnes, C., Fritz, U., Jablonski, D., Lymberakis, P., Martinez-Solano, I., Razzetti, E., Vamberger, M., Vences, M., Voros, J. & Crochet, P.A. (2020) Species list of the European herpetofauna-2020 update by the Taxonomic Committee of the Societas Europaea Herpetologica. Amphibia-Reptilia, 41 (2), 139-189. https://doi.org/10.1163/15685381-bja10010
- Tan, H.Z., Ng, E.Y.X., Tang, Q., Allport, G.A., Jansen, J.J., Tomkovich, P.S. & Rheindt, F.E. (2019) Population genomics of two congeneric Palaearctic shorebirds reveals differential impacts of Quaternary climate oscillations across habitats types. Scientific Reports, 9 (1), 1-9. https://doi.org/10.1038/s41598-019-54715-9
- Turbek, S.P., Schield, D.R., Scordato, E.S., Contina, A., Da, X.W., Liu, Y., Liu, Y., Pagani- Nunez, E., Ren, Q.-M., Smith, C.C.R., Stricker, C.A., Wunder, M., Zonana, D.M. & Safran, R.J. (2022) A migratory divide spanning two continents is associated with genomic and ecological divergence. Evolution, 76 (4), 722-736. https://doi.org/10.1111/evo.14448
- van Els, P. & Norambuena, H.V. (2018) A revision of species limits in Neotropical pipits Anthus based on multilocus genetic and vocal data. Ibis, 160 (1), 158-172. https://doi.org/10.1111/ibi.12511
- Winker, K., McCracken, K.G., Gibson, D.D. & Peters, J.L. (2013) Heteropatric speciation in a duck, Anas crecca. Molecular Ecology, 22 (23), 5922-5935. https://doi.org/10.1111/mec.12525
- Zink, R.M., Rohwer, S., Andreev, A.V. & Dittmann, D.L. (1995) Trans-Beringia comparisons of mitochondrial DNA differentiation in birds. The Condor, 97 (3), 639-649. https://doi.org/10.2307/1369173
- Zink, R.M., Rohwer, S., Drovetski, S., Blackwell-Rago, R.C. & Farrell, S.L. (2002) Holarctic phylogeography and species limits of three-toed woodpeckers. Condor, 104 (1), 167-170. https://doi.org/10.1093/condor/104.1.167
- Zink, R.M. & Barrowclough, G.F. (2008) Mitochondrial DNA under siege in avian phylogeography. Molecular Ecology, 17 (9), 2107-2121. https://doi.org/10.1111/j.1365-294X.2008.03737.x