Published September 4, 2023
| Version 2023-09-01
Software
Open
colomoto/colomoto-docker: 2023-09-01
Authors/Creators
- 1. IBM Interactive
- 2. I2BC Institute for Integrative Biology of the Cell
- 3. @actions
Description
Fetch and run this image using
pip install -U colomoto-docker
colomoto-docker -V 2023-09-01
| Package | Version | Description |
|---|---|---|
| AEON.py | 0.2.0 | Symbolic analysis (attractors, reachability) of (partially specified) Boolean networks |
| BNS | 1.3 | Identification of synchronous attractors using SAT |
| BoNesis | 0.5.7 | Synthesis of Most Permissive Boolean Networks from network architecture and dynamical properties |
| BooleanNet | 1.2.8 | Simulation of Boolean Regulatory networks |
| boolSim | 1.2 | Computation of attractors and reachable sets in synchronous and asynchronous Boolean Networks |
| boolSim-python | 0.5 | Python interface to boolSim |
| CABEAN | 1.0.0 | A Software Tool for the Control of Asynchronous Boolean Networks |
| CABEAN-python | 1.0 | Python interface to CABEAN |
| Caspo | 4.0.1 | Reasoning on the response of logical signaling networks with Answer Set Programming |
| Caspo-control | 1.0 | Python wrapper to the control method of caspo |
| CaSQ | 1.0.3 | Convert static interaction maps into executable models |
| clingo | 5.6.2 | Answer-Set Programming solver |
| colomoto_jupyter | 0.8.7 | CoLoMoTo Python module |
| ERODE-Python | 0.7.2 | Backward Boolean Equivalence Reduction of Boolean networks |
| GINsim | 3.0.0b | Boolean and multi-valued network modelling |
| GINsim-Python | 0.4.3 | Python interface to GINsim and bioLQM |
| ITSTools | 20210125 | Symbolic model-checker |
| MaBoSS | 2.5.2 | Markovian Boolean Stochastic Simulator |
| mpbn | 3.3 | Brief implementation of Most Permissive Boolean Networks |
| NORDic | 2.4.3 | Network Oriented Repurposing of Drugs |
| NuSMV | 2.6.0 | Symbolic model-checker |
| Pint | 2019.05.24 | Static analyzer for dynamics of Automata Networks |
| ActoNet | 1.0 | Abduction-based control of fixed points of Boolean networks |
| PyBoolNet | 3.0.10 | Generation, modification and analysis of Boolean networks |
| PyMaBoSS | 0.8.5 | Python interface to MaBoSS |
| PyPint | 1.6.3 | Python interface to Pint |
| pystablemotifs | 3.0.4dev1 | A PyBoolNet implementation of stable motif algorithms, including oscillation checking. |
| R-BoolNet | 2.1.8 | Analysis and reconstruction of Boolean networks dynamics |
Files
colomoto/colomoto-docker-2023-09-01.zip
Files
(2.0 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:c75c17ec5d6f4521dee712661227d368
|
2.0 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/colomoto/colomoto-docker/tree/2023-09-01 (URL)