Published July 17, 2017
| Version FunSec-v3
Video/Audio
Open
Lonewolfenrir/FunSec FunSec-v3
Authors/Creators
- 1. Department of Biology, Centre for Environmental and Marine Studies, University of Aveiro, Aveiro, Portugal
- 2. Departamento de Biologia Animal, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal, cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
Description
This script was designed to automate the prediction of fungi secreted proteins from a single or a batch of FASTA files using a complex pipeline that uses programs for the prediction of signal peptides, trans-membrane regions, subcellular localization and endoplasmic reticulum targeting motif. It can also be used for the prediction of complete fungi secretomes when given their proteomes.
Notes
Thanks are due, for the financial support to CESAM (UID/AMB/50017-POCI- 01-0145-FEDER-007638) and to the research project ALIEN (PTDC/AGR- PRO/2183/2014-POCI-01-0145-FEDER-016788), to FCT/MEC through national funds, within the PT2020 Partnership Agreement and Compete 2020. The authors acknowledge FCT financial support to A Alves (IF/00835/2013) and AC Esteves (BPD/102572/2014).
Files
Lonewolfenrir/FunSec-FunSec-v3.zip
Files
(29.0 kB)
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md5:000059d5686b202c7ca159692223677c
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Additional details
Related works
- Is supplement to
- https://github.com/Lonewolfenrir/FunSec/tree/FunSec-v3 (URL)