There is a newer version of the record available.

Published September 1, 2023 | Version v1.4.6
Software Open

andersen-lab/Freyja: 1.4.6

Authors/Creators

  • 1. Scripps Research
  • 2. UCSD - Dept. of Pediatrics
  • 3. Biomathematics and Statistics Scotland
  • 4. Broad Institute of MIT and Harvard
  • 5. Wyoming Public Health Laboratory

Description

Update barcodes
  • Now pulls barcodes from GISAID tree by default
Variants
  • Added option to include amino-acid annotations plot-covariants
Plot Covariants
  • Now creates heatmap plots, showing the frequency of each covariants pattern.
  • Additional minor fixes

Files

andersen-lab/Freyja-v1.4.6.zip

Files (8.7 MB)

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md5:5d247f7c1fc1787468666a3473ace97b
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Additional details

Related works

Is supplement to
https://github.com/andersen-lab/Freyja/tree/v1.4.6 (URL)