Published November 20, 2023
| Version v1
Dataset
Open
Spatial metatranscriptomics resolves host-bacteria-fungi interactomes, Source Data
Authors/Creators
- 1. SciLifeLab, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden
- 2. Max Planck Institute for Biology Tübingen, Tübingen, Germany
Description
Source Data for a publication: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes.
Includes the data sets to generate the results.
Contains five different experiment types:
- Pst bacterial infiltration experiment
- Enrichment experiment with different array types
- Comparison between SmT vs. Amp-seq
- Outdoor-grown leaf experiments
- Sterile leaf experiment
For each of the experiments are included (if generated, see the README file):
- Gene count matrices
- Microbial taxa count matrices
- Bright field images
- Alignment files (Spot files)
- Putative microbial reads and related probe information
- Data for enrichment analysis
- Fluorescent images and corresponding fluorescent values
Files
Files
(22.8 GB)
| Name | Size | |
|---|---|---|
|
md5:e3f99e9810b312d5fd66c4d5dd6cfafd
|
1.9 GB | Download |
|
md5:05b270c3dbc01c2b39413150e7a49685
|
4.0 GB | Download |
|
md5:76b2e872fe43738f7db9dda22d247883
|
724.3 MB | Download |
|
md5:eff0fcaf32d8434e3fe6dbbc05d64d14
|
14.4 GB | Download |
|
md5:6ff3c28b6b6bcd9cc810d2d365362496
|
12.0 kB | Download |
|
md5:f2eb8d609e63f7fd896fa89d83153bb5
|
1.1 GB | Download |
|
md5:0c08d5892bcc36ad4aa0a8113ed609b0
|
820.6 MB | Download |
Additional details
Related works
- Is published in
- Preprint: 10.1101/2022.07.18.496977 (DOI)
- Journal article: 10.1038/s41587-023-01979-2 (DOI)