Published August 28, 2023 | Version v1.0.0
Software Open

Pretrained model for 3D semantic image segmentation of the FDG-avid lesions from PT/CT scans

Authors/Creators

  • 1. BAMF Health

Description

These weights are for an nnUnet v1 model that segments fdg-avid lesions from fdg-pet/ct scans. The model is trained on AutoPET23 dataset that has been augmented with predictions from TotalSegmentator to add more tasks.

Files

Task762_PET_CT_Breast.zip

Files (1.2 GB)

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Additional details

References

  • Isensee, F., Jaeger, P. F., Kohl, S. A., Petersen, J., & Maier-Hein, K. H. (2021). nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation. Nature methods, 18(2), 203-211.
  • Gatidis S, Kuestner T. A whole-body FDG-PET/CT dataset with manually annotated tumor lesions (FDG-PET-CT-Lesions) [Dataset]. The Cancer Imaging Archive, 2022. DOI: 10.7937/gkr0-xv29
  • Wasserthal, J., Breit, H.-C., Meyer, M.T., Pradella, M., Hinck, D., Sauter, A.W., Heye, T., Boll, D., Cyriac, J., Yang, S., Bach, M., Segeroth, M., 2023. TotalSegmentator: Robust Segmentation of 104 Anatomic Structures in CT Images. Radiology: Artificial Intelligence. https://doi.org/10.1148/ryai.230024