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Published August 19, 2023 | Version 1.10.0
Software Open

ms609/TreeTools: v1.10.0

Authors/Creators

  • 1. Department of Earth Sciences, Durham University
  • 2. @actions
  • 3. @posit-pbc

Description

New methods and functions
  • TipTimedTree() displays trees where leaves are associated with absolute ages.
  • ReadMrBayesTrees() samples trees from posterior of MrBayes output.
  • is.TreeNumber() method.
Improvements
  • Support zero-edge trees in as.Splits() and NSplits().
  • Support empty constraints in AddUnconstrained().
  • Add space between tokens in WriteTntCharacters() to support continuous characters (#139).
Deprecations and breaking changes
  • Change order of parameters in DescendantEdges()
  • Deprecate AllDescendantEdges(); use DescendantEdges() instead.
  • Deprecate EnforceOutgroup(); use RootTree() instead.
  • Remove NonDuplicateRoot() and in.Splits().

Files

ms609/TreeTools-1.10.0.zip

Files (1.0 MB)

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md5:37e993f6442915b169793c62331cdead
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Additional details

Related works

Is supplement to
https://github.com/ms609/TreeTools/tree/1.10.0 (URL)