Distribution-modeling quantifies collective Th cell decision circuits in chronic inflammation

Code underlying the manuscript "Distribution-modeling quantifies collective Th cell decision circuits in chronic inflammation".

# Usage
Download repository to local drive and set up a python environment (conda) with dependencies listed below.
When running the code, the working directory is expected to be the same dir as the respective source file.

# Requirements
python 3.9.12
scipy 1.7.3
seaborn 0.11.2
pandas 1.4.2
numpy 1.21.5
numba 0.55.1
matplotlib 3.5.1
lmfit 1.0.3

Pathway analysis was run using R version 4.2.1 with the clusterProfiler package.