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Published July 7, 2023 | Version v0.7.0-alpha
Software Open

BGCFlow

Description

This pre-release upgrade BGCFlow to use antiSMASH 7.0.0 and GTDB release 214. Some other dependencies are not yet stable, hence a pre-release.

What's Changed
  • Dev 0.7.0 by @matinnuhamunada in https://github.com/NBChub/bgcflow/pull/254

  • feat: upgrade to antismash 7

  • feat: upgrade gtdbtk and gtdb to release 214
  • chore: move default logs location
  • chore: make an alias for rules/pipelines and name/pep
  • fix: grab ARTS from release instead of git clone
  • fix: correct ARTS setup
  • feat: upgrade bigslice for compatibility with antiSMASH7
  • test: update test for 0.7.0
  • fix: enable ani_screen in gtdbtk
  • fix: correct gtdb release versioning
  • chore: set ani_screen off as default for gtdbtk
  • docs: add quickstart video
  • feat: upgrade extraction from mmseqs2 and clinker
  • feat: process mmseqs2 cog feature
  • fix: handle non standard BGC genbanks
  • feat: enable to switch between antismash 7 and 6
  • docs: mention about the WIKI

Full Changelog: https://github.com/NBChub/bgcflow/compare/v0.6.4...v0.7.0-alpha

Notes

If you find this repository useful, please cite it using the following publication.

Files

NBChub/bgcflow-v0.7.0-alpha.zip

Files (9.1 MB)

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