Published June 30, 2023
| Version v3.5.0
Software
Open
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
Authors/Creators
- Unni, Deepak R.
- Moxon, Sierra A. T.
- Bada, Michael
- Brush, Matthew
- Bruskiewich, Richard
- Caufield, J. Harry
- Clemons, Paul A.
- Dancik, Vlado
- Dumontier, Michel
- Fecho, Karamarie
- Glusman, Gustavo
- Hadlock, Jennifer J.
- Harris, Nomi L.
- Joshi, Arpita
- Putman, Tim
- Qin, Guangrong
- Ramsey, Stephen A.
- Shefchek, Kent A.
- Solbrig, Harold
- Soman, Karthik
- Thessen, Anne E.
- Haendel, Melissa A.
- Bizon, Chris
- Mungall, Christopher J.
- Acevedo, Liliana
- Ahalt, Stanley C.
- Alden, John
- Alkanaq, Ahmed
- Amin, Nada
- Avila, Ricardo
- Balhoff, Jim
- Baranzini, Sergio E.
- Baumgartner, Andrew
- Baumgartner, William
- Belhu, Basazin
- Brandes, MacKenzie
- Brandon, Namdi
- Burtt, Noel
- Byrd, William
- Callaghan, Jackson
- Cano, Marco Alvarado
- Carrell, Steven
- Celebi, Remzi
- Champion, James
- Chen, Zhehuan
- Chen, Mei‐Jan
- Chung, Lawrence
- Cohen, Kevin
- Conlin, Tom
- Corkill, Dan
- Costanzo, Maria
- Cox, Steven
- Crouse, Andrew
- Crowder, Camerron
- Crumbley, Mary E.
- Dai, Cheng
- Dančík, Vlado
- De Miranda Azevedo, Ricardo
- Deutsch, Eric
- Dougherty, Jennifer
- Duby, Marc P.
- Duvvuri, Venkata
- Edwards, Stephen
- Emonet, Vincent
- Fehrmann, Nathaniel
- Flannick, Jason
- Foksinska, Aleksandra M.
- Gardner, Vicki
- Gatica, Edgar
- Glen, Amy
- Goel, Prateek
- Gormley, Joseph
- Greyber, Alon
- Haaland, Perry
- Hanspers, Kristina
- He, Kaiwen
- He, Kaiwen
- Henrickson, Jeff
- Hinderer, Eugene W.
- Hoatlin, Maureen
- Hoffman, Andrew
- Huang, Sui
- Huang, Conrad
- Hubal, Robert
- Huellas‐Bruskiewicz, Kenneth
- Huls, Forest B.
- Hunter, Lawrence
- Hyde, Greg
- Issabekova, Tursynay
- Jarrell, Matthew
- Jenkins, Lindsay
- Johs, Adam
- Kang, Jimin
- Kanwar, Richa
- Kebede, Yaphet
- Kim, Keum Joo
- Kluge, Alexandria
- Knowles, Michael
- Koesterer, Ryan
- Korn, Daniel
- Koslicki, David
- Krishnamurthy, Ashok
- Kvarfordt, Lindsey
- Lee, Jay
- Leigh, Margaret
- Lin, Jason
- Liu, Zheng
- Liu, Shaopeng
- Ma, Chunyu
- Magis, Andrew
- Mamidi, Tarun
- Mandal, Meisha
- Mantilla, Michelle
- Massung, Jeffrey
- Mauldin, Denise
- McClelland, Jason
- McMurry, Julie
- Mease, Philip
- Mendoza, Luis
- Mersmann, Marian
- Mesbah, Abrar
- Might, Matthew
- Morton, Kenny
- Muller, Sandrine
- Muluka, Arun Teja
- Osborne, John
- Owen, Phil
- Patton, Michael
- Peden, David B.
- Peene, R. Carter
- Persaud, Bria
- Pfaff, Emily
- Pico, Alexander
- Pollard, Elizabeth
- Price, Guthrie
- Raj, Shruti
- Reilly, Jason
- Riutta, Anders
- Roach, Jared
- Roper, Ryan T.
- Rosenblatt, Greg
- Rubin, Irit
- Rucka, Sienna
- Rudavsky‐Brody, Nathaniel
- Sakaguchi, Rayn
- Santos, Eugene
- Schaper, Kevin
- Schmitt, Charles P.
- Schurman, Shepherd
- Scott, Erik
- Seitanakis, Sarah
- Sharma, Priya
- Shmulevich, Ilya
- Shrestha, Manil
- Shrivastava, Shalki
- Sinha, Meghamala
- Smith, Brett
- Southall, Noel
- Southern, Nicholas
- Stillwell, Lisa
- Strasser, Michael " Michi"
- Su, Andrew I.
- Ta, Casey
- Thessen, Anne E.
- Tinglin, Jillian
- Tonstad, Lucas
- Tran‐Nguyen, Thi
- Tropsha, Alexander
- Vaidya, Gaurav
- Veenhuis, Luke
- Viola, Adam
- Grotthuss, Marcin
- Wang, Max
- Wang, Patrick
- Watkins, Paul B.
- Weber, Rosina
- Wei, Qi
- Weng, Chunhua
- Whitlock, Jordan
- Williams, Mark D.
- Williams, Andrew
- Womack, Finn
- Wood, Erica
- Wu, Chunlei
- Xin, Jiwen Kevin
- Xu, Hao
- Xu, Colleen
- Yakaboski, Chase
- Yao, Yao
- Yi, Hong
- Yilmaz, Arif
- Zheng, Marissa
- Zhou, Xinghua
- Zhou, Eric
- Zhu, Qian
- Zisk, Tom
Description
What's Changed
- Adding xref for Text Mining KP by @edgargaticaCU in https://github.com/biolink/biolink-model/pull/1332
- Update MolePro xref in infores catalog by @vdancik in https://github.com/biolink/biolink-model/pull/1334
- Fix broken link in guidelines/README.md by @Daniel-Mietchen in https://github.com/biolink/biolink-model/pull/1336
- update BTE link in infores catalog by @andrewsu in https://github.com/biolink/biolink-model/pull/1337
- Add "full name" slot to the "named thing" slot list by @kevinschaper in https://github.com/biolink/biolink-model/pull/1335
- log odds ratio 95 ci by @CaseyTa in https://github.com/biolink/biolink-model/pull/1340
- Update dataset iri mappings by @nicholsn in https://github.com/biolink/biolink-model/pull/1338
- Stop gap changes to infores_catalog.yaml including knowledge_level and agent_type fields by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1331
- Update BTE link to point to Translator wiki page by @andrewsu in https://github.com/biolink/biolink-model/pull/1342
- add simple script to extract infores resources without URLs or with g… by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1343
- Updated infores catalog according to spreadsheet curation by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1345
- fix : in url by @sierra-moxon in https://github.com/biolink/biolink-model/pull/1346
- Update infores_catalog.yaml by @karafecho in https://github.com/biolink/biolink-model/pull/1347
- @Daniel-Mietchen made their first contribution in https://github.com/biolink/biolink-model/pull/1336
- @nicholsn made their first contribution in https://github.com/biolink/biolink-model/pull/1338
Full Changelog: https://github.com/biolink/biolink-model/compare/v3.4.3...v3.5.0
Notes
Please cite the following works when using this software.
Files
biolink/biolink-model-v3.5.0.zip
Files
(5.6 MB)
| Name | Size | Download all |
|---|---|---|
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md5:c6fe02955e12578fbdaf75bd6a2d7852
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Additional details
Related works
- Is supplement to
- https://github.com/biolink/biolink-model/tree/v3.5.0 (URL)