Published June 3, 2021 | Version 2.0
Dataset Open

Simulated brainweb PET/MR data sets for denoising and deblurring

Authors/Creators

  • 1. Stanford University, KU Leuven

Description

The data set consists of 20 subjects based on the normal anatomical models from the brainweb phantom. See https://brainweb.bic.mni.mcgill.ca/.

For each subjectXX the data is organized as follows:

  1. image_0.nii.gz -> (1st simulated "random" PET contrast)
  2. image_1.nii.gz -> (2nd simulated "random" PET contrast)
  3. image_2.nii.gz -> (3rd simulated "random" PET contrast)
  4. attenuation_image.nii.gz -> (attenuation image)
  5. t1.nii.gz -> (high resolution T1 MR)

All data sets have a shape of (220,220,184) and a voxel size of 1mm x 1mm x 1mm and are provided in nifti format.
The T1 MR scans and antomical models used to create the ground truth PET images are taken from the BrainWeb: Simulated Brain Database.

See:

    http://www.bic.mni.mcgill.ca/brainweb/
    C.A. Cocosco, V. Kollokian, R.K.-S. Kwan, A.C. Evans : "BrainWeb: Online Interface to a 3D MRI Simulated Brain Database"
    NeuroImage, vol.5, no.4, part 2/4, S425, 1997 -- Proceedings of 3-rd International Conference on Functional Mapping of the Human Brain, Copenhagen, May 1997.
    R.K.-S. Kwan, A.C. Evans, G.B. Pike : "MRI simulation-based evaluation of image-processing and classification methods"
    IEEE Transactions on Medical Imaging. 18(11):1085-97, Nov 1999.
    R.K.-S. Kwan, A.C. Evans, G.B. Pike : "An Extensible MRI Simulator for Post-Processing Evaluation"
    Visualization in Biomedical Computing (VBC'96). Lecture Notes in Computer Science, vol. 1131. Springer-Verlag, 1996. 135-140.
    D.L. Collins, A.P. Zijdenbos, V. Kollokian, J.G. Sled, N.J. Kabani, C.J. Holmes, A.C. Evans : "Design and Construction of a Realistic Digital Brain Phantom"
    IEEE Transactions on Medical Imaging, vol.17, No.3, p.463--468, June 1998

Files

brainweb_petmr_v2.zip

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