Published November 21, 2022 | Version v0.3.0
Software Open

PGScatalog/pgscatalog_utils: v0.3.0

Authors/Creators

  • 1. EMBL-EBI
  • 2. @PGScatalog / @InouyeLab, University of Cambridge
  • 3. Wellcome Sanger Institute & HDR-UK

Description

Changelog
  • Handle large traits in the PGS Catalog more efficiently (e.g. cancer, autoimmune diseases)
    • Split - apply - combine approach: added combine_matches for use with (match_variants --only_match)
    • More lazy operations
  • Improve correctness of labelling: now all matches are labelled simultaneously
  • Get scoring file information (e.g. publication, trait) from header data and store in a separate log file

Files

PGScatalog/pgscatalog_utils-v0.3.0.zip

Files (127.0 kB)

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Additional details

Related works

Is supplement to
https://github.com/PGScatalog/pgscatalog_utils/tree/v0.3.0 (URL)