Published May 9, 2023 | Version v1
Poster Open

The eNanoMapper Ontology v9.0: Semi-automated and Community-based Ontology Development

Authors/Creators

  • 1. Maastricht University

Description

The release of version 9.0 marks the transition of the ontology build to a GitHub Actions-based system. Since the build actions can be (programmatically) monitored, the new development cycle allows downstream users, like other NanoSafety cluster projects, to quickly react to new releases and integrate them into their own workflows.With the continuous discussion on domain terminology and knowledge representation ever changing together with our understanding of the chemistry and biology of NanoSafety, the eNanoMapper ontology will keep being supported and expanded with new community requested classes and properties in future releases to serve as a data curation  completeness standard in the domain.

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Additional details

Funding

European Commission
NanoSolveIT - Innovative Nanoinformatics models and tools: towards a Solid, verified and Integrated Approach to Predictive (eco)Toxicology (NanoSolveIT) 814572
European Commission
NanoCommons - The European Nanotechnology Community Informatics Platform: Bridging data and disciplinary gaps for industry and regulators (NanoCommons) 731032

References

  • Hastings, J., Jeliazkova, N., Owen, G., Tsiliki, G., Munteanu, C. R., Steinbeck, C., & Willighagen, E. (2015). eNanoMapper: Harnessing ontologies to enable data integration for nanomaterial risk assessment. Journal of Biomedical Semantics, 6(1). https://doi.org/10.1186/s13326-015-0005-5
  • Hastings, J., Jeliazkova, N., Owen, G., Tsiliki, G., Munteanu, C. R., Steinbeck, C., & Willighagen, E. & Millan Acosta, J. (2023). eNanoMapper 9.0 (9.0). Zenodo. https://doi.org/10.5281/zenodo.7503729
  • https://github.com/enanomapper/ontologies
  • Matentzoglu, N., Goutte-Gattat, D., Tan, S. Z. K., Balhoff, J. P., Carbon, S., Caron, A. R., Duncan, W. D., Flack, J. E., Haendel, M., Harris, N. L., Hogan, W. R., Hoyt, C. T., Jackson, R. C., Kim, H., Kir, H., Larralde, M., McMurry, J. A., Overton, J. A., Peters, B., ... Osumi-Sutherland, D. (2022). Ontology Development Kit: A toolkit for building, maintaining and standardizing biomedical ontologies. Database, 2022, baac087. https://doi.org/10.1093/database/baac087
  • Jackson, R.C., Balhoff, J.P., Douglass, E. et al. ROBOT: A Tool for Automating Ontology Workflows. BMC Bioinformatics 20, 407 (2019). https://doi.org/10.1186/s12859- 019-3002-3