There is a newer version of the record available.

Published June 1, 2017 | Version v1
Dataset Open

Silva taxonomic training data formatted for DADA2 (Silva version 128)

  • 1. NC State University

Description

These DADA2-formatted training fasta files were derived from the Silva Project's version 128 release. They are available under the Silva dual-licensing model for academia and commercial users: https://www.arb-silva.de/silva-license-information/

These fastas were generated by the following commands (using the dada2 R package version 1.5.1):

path <- "~/Desktop/Silva/Silva.nr_v128"
dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v128.align"), file.path(path, "silva.nr_v128.tax"), "~/tax/silva_nr_v128_train_set.fa.gz")

dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_128_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v128.fa.gz")

Notes

These files are derived from the Silva database, and their use is subject to the Silva dual-licensing model for academia and commercial users: https://www.arb-silva.de/silva-license-information/

Files

Files (88.4 MB)

Name Size Download all
md5:feff0d7cb0962e6e21161a4bcadeb22f
1.7 kB Download
md5:5f5d979e5c0b0eb27036ff48f1d97a71
54.1 MB Download
md5:f67d7d9443312ca38a9fbf61fc744ae4
34.3 MB Download