Silva taxonomic training data formatted for DADA2 (Silva version 128)
Description
These DADA2-formatted training fasta files were derived from the Silva Project's version 128 release. They are available under the Silva dual-licensing model for academia and commercial users: https://www.arb-silva.de/silva-license-information/
These fastas were generated by the following commands (using the dada2 R package version 1.5.1):
path <- "~/Desktop/Silva/Silva.nr_v128"
dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v128.align"), file.path(path, "silva.nr_v128.tax"), "~/tax/silva_nr_v128_train_set.fa.gz")dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_128_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v128.fa.gz")
Notes
Files
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md5:feff0d7cb0962e6e21161a4bcadeb22f
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