nf-core
Published June 5, 2026 | Version 5.1.0
Software Open

nf-core/airrflow: 5.1.0 - Ventus

Authors/Creators

  • 1. Boehringer Ingelheim
  • 2. oNKo-innate
  • 3. Pfizer
  • 4. @seqeralabs
  • 5. Seqera
  • 6. Tgen
  • 7. Robert Bosch GmbH

Description

Added

  • #407 Added genotyping sub-workflow.
  • #424 Added support for AIRR-C germline reference.

Fixed

  • #420 Fixed a bug in the Alakazam collapseDuplicates function.
  • #411 Fixed a bug in Enchantr dowser_lineage project.
  • #453 Fix publishDir collisions in PRESTO_PARSE_CLUSTER and PRESTO_PAIRSEQ_CLUSTERSETS.
  • #469 Fixed bug with param --skip_report.

Dependencies

| Dependency | Old version | New version | | ---------- | ----------- | ----------- | | alakazam | 1.3.1 | 1.4.3 | | r-shazam | 1.2.0 | 1.3.2 | | scoper | 1.3.0 | 1.5.0 | | enchantr | 0.1.22 | 0.1.25 | | presto | 0.7.6 | 0.7.8 | | changeo | 1.3.0 | 1.3.4 | | dowser | 2.4.0 | 2.4.1 | | wget | 1.20.1 | 1.25.0 | | tigger | | 1.1.3 |

Deprecations and changes

  • #451 Removed repertoire analysis from clonal assignment report. Added repertoire report which includes clone size distribution, clonal abundance, diversity, clonal overlap and mutation frequency.
  • The param fetch_imgt has been updated to fetch_germlines and it now accepts the options none, imgt or airrc-imgt.
  • The param save_databases has been updated to save_germlines.

Files

nf-core/airrflow-5.1.0.zip

Files (6.0 MB)

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md5:322cc26495306650c46292d54cf384d7
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/airrflow/tree/5.1.0 (URL)

Software

Repository URL
https://github.com/nf-core/airrflow